Difference between revisions of "Relax 1.2.2"

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(Increased the sectioning depth.)
(Link out to the dx.map manual page.)
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{{lowercase title}}
 
{{lowercase title}}
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{{infobox relax release
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| version  = 1.2.2
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| prev    = 1.2.1
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| next    = 1.2.3
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| keywords = Operating system compatibility
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| type    = Major feature
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| date    = 20 February 2006
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| manual  = yes
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}}
  
 
== Description ==
 
== Description ==
  
 
<section begin=description/>
 
<section begin=description/>
This release improves compatibility for different operating systems including Unix, Mac OS X, and Windows.  To achieve this, the make system has been replaced by the Sconstruct system.  Both the Dasha and Modelfree4 code has been significantly improved.  A number of bugs have also been fixed including:
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This release improves compatibility for different operating systems including Unix, Mac OS X, and Windows.  To achieve this, the make system has been replaced by the Sconstruct system.  Both the [[Dasha]] and [[Modelfree4]] code has been significantly improved.  A number of bugs have also been fixed including:
  
* The [http://www.nmr-relax.com/api/1.2/generic_fns.dasha-pysrc.html#Dasha.create_script automatically generated Dasha script] has been fixed.  Previously the optimise command used was 'min all' or 'lmin all'.  This is incorrect and the proper syntax is 'min m n' or 'lmin m n' where m is the first residue number while n is the last.
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* The [http://www.nmr-relax.com/api/1.2/generic_fns.dasha-pysrc.html#Dasha.create_script automatically generated Dasha script] has been fixed.  Previously the optimise command used was <code>min all</code> or <code>lmin all</code>.  This is incorrect and the proper syntax is <code>min m n</code> or <code>lmin m n</code> where m is the first residue number while n is the last.
  
* The code of [http://www.nmr-relax.com/api/1.2/generic_fns.value-module.html generic_fns/value.py], [http://www.nmr-relax.com/api/1.2/generic_fns.diffusion_tensor-module.html generic_fns/diffusion_tensor.py], and [http://www.nmr-relax.com/api/1.2/specific_fns.model_free-module.html specific_fns/model_free.py] has been fixed to properly handle the local &tau;<sub>m</sub> parameter as well as the global &tau;<sub>m</sub> parameter.
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* The code of [http://www.nmr-relax.com/api/1.2/generic_fns.value-module.html generic_fns/value.py], [http://www.nmr-relax.com/api/1.2/generic_fns.diffusion_tensor-module.html generic_fns/diffusion_tensor.py], and [http://www.nmr-relax.com/api/1.2/specific_fns.model_free-module.html specific_fns/model_free.py] has been fixed to properly handle the local {{:tau_m}} parameter as well as the global {{:tau_m}} parameter.
  
* The local &tau;<sub>m</sub> parameter can now also be part of the parameter set for an OpenDX map of the chi-squared space.
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* The local {{:tau_m}} parameter can now also be part of the parameter set for an [http://www.nmr-relax.com/manual/dx_map.html OpenDX map of the chi-squared space].
  
 
* The optimisation code has been fixed to handle the unstable, broken Numeric Python packages so that the Cholesky Hessian modification works again and the eigenvalue decomposition (which now freezes Python) is avoided.
 
* The optimisation code has been fixed to handle the unstable, broken Numeric Python packages so that the Cholesky Hessian modification works again and the eigenvalue decomposition (which now freezes Python) is avoided.
  
* The file [http://www.nmr-relax.com/api/1.2/generic_fns.palmer-module.html generic_fns/palmer.py] has been modified to gracefully handle a Modelfree4 bug whereby the 'mfout' output file has been corrupted due to the fusion of columns.
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* The file [http://www.nmr-relax.com/api/1.2/generic_fns.palmer-module.html generic_fns/palmer.py] has been modified to gracefully handle a [[Modelfree4]] bug whereby the <code>mfout</code> output file has been corrupted due to the fusion of columns.
 
<section end=description/>
 
<section end=description/>
  

Revision as of 16:00, 15 December 2015


Official relax releases
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relax version 1.2.2
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← relax 1.2.1 relax 1.2.3 →

Keywords Operating system compatibility
Release type Major feature
Release date 20 February 2006

The PDF version of the relax 1.2.2 user manual The relax 1.2.2 user manual

Description

This release improves compatibility for different operating systems including Unix, Mac OS X, and Windows. To achieve this, the make system has been replaced by the Sconstruct system. Both the Dasha and Modelfree4 code has been significantly improved. A number of bugs have also been fixed including:

  • The automatically generated Dasha script has been fixed. Previously the optimise command used was min all or lmin all. This is incorrect and the proper syntax is min m n or lmin m n where m is the first residue number while n is the last.
  • The optimisation code has been fixed to handle the unstable, broken Numeric Python packages so that the Cholesky Hessian modification works again and the eigenvalue decomposition (which now freezes Python) is avoided.
  • The file generic_fns/palmer.py has been modified to gracefully handle a Modelfree4 bug whereby the mfout output file has been corrupted due to the fusion of columns.


Links

For reference, the following links are also part of the announcement for this release:


Announcements

If you would like to receive announcements about new relax versions, please subscribe to the relax announcement mailing list. This list only receives ~10 emails per year. It is archived at the SourceForge archives and in The Mail Archive.


See also