Matplotlib example - Revision history

Bugman at 14:00, 15 October 2015

2015-10-15T14:00:22Z

Tlinnet: /* Example */

2014-01-14T17:07:52Z

Example

Troels Emtekær Linnet at 14:50, 10 December 2013

2013-12-10T14:50:28Z

Troels Emtekær Linnet: Created page with "== Example == File: '''mat_example.py''' # Get the OS path separator from os import sep # Find relax installation dir from status import Status; status..."

2013-12-10T14:49:35Z

Created page with "== Example == File: '''mat_example.py''' <source lang="python"> # Get the OS path separator from os import sep # Find relax installation dir from status import Status; status..."

New page

== Example ==

File: '''mat_example.py'''
<source lang="python">
# Get the OS path separator
from os import sep
# Find relax installation dir
from status import Status; status = Status()

# Import some tools to loop over the spins.
from pipe_control.mol_res_spin import return_spin, spin_loop

# Extra tools fo
import specific_analyses.relax_disp.disp_data as dtools

# Plotting facility.
import matplotlib.pyplot as plt

# Path to data
data_path = status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'dispersion'+sep+'Hansen'+sep+'relax_results'

# Load the state
state.load(data_path+sep+'final_state.bz2', force=True)

# Loop over the spins
for spin, spin_id in spin_loop(return_id=True):
print spin, spin_id

# Get the available data for a spin.
print(dir(spin))

resi_data = []
kex_data = []
for resiob in cdp.mol[0].res:
print resiob.name, resiob.num, resiob.spin[0].kex, resiob.spin[0].model
resi_data.append(resiob.num), kex_data.append(resiob.spin[0].kex)

print(dir(resiob))

plt.plot(resi_data, kex_data, 'ro')
plt.show()
</source>

== To run ==
<source lang="bash">
relax mat_example.py
</source>

Or
<source lang="bash">
$ relax
relax> script('mat_example.py')
</source>

← Older revision		Revision as of 14:00, 15 October 2015
Line 1:		Line 1:
		+	__TOC__
		+
	== Example ==		== Example ==

← Older revision		Revision as of 14:50, 10 December 2013
Line 52:		Line 52:
	relax> script('mat_example.py')		relax> script('mat_example.py')
	</source>		</source>
		+
		+	== See also ==
		+	[[Category:matplotlib]]

@@ Line 39: / Line 39: @@
 plt.plot(resi_data, kex_data, 'ro')
 plt.show()
 </source>