Relax 1.3.0 - Revision history

Bugman: Switch to the {{gna task link}} template to remove dead Gna! links.

2020-10-16T12:28:00Z

Switch to the {{gna task link}} template to remove dead Gna! links.

Bugman: /* Links */ Fix the broken Gna! forum link by switching to {{gna link}}.

2020-10-13T22:03:34Z

Links: Fix the broken Gna! forum link by switching to {{gna link}}.

Bugman: Added the 'manual' parameter to {{infobox relax release}}.

2015-11-03T10:50:53Z

Added the 'manual' parameter to {{infobox relax release}}.

Bugman: Added an infobox.

2015-10-22T07:44:10Z

Added an infobox.

Bugman: Increased the sectioning depth.

2015-10-21T21:17:45Z

Increased the sectioning depth.

Bugman: /* See also */ Added a link to the API documentation.

2014-11-26T10:22:13Z

See also: Added a link to the API documentation.

Bugman: Created a links section.

2014-09-20T18:31:03Z

Created a links section.

Bugman: User function HTML manual links.

2014-09-20T18:25:18Z

User function HTML manual links.

Bugman: Line breaks.

2014-09-10T20:01:55Z

Line breaks.

Bugman: Transclusion of the relax release see also page.

2014-09-10T20:01:40Z

Transclusion of the relax release see also page.

@@ Line 52: / Line 52: @@
 <section begin=changes/>
-*  The unmodified Hessian and turning the line search off are now specified by different regular expressions. ([https://gna.org/task/?3630 see task #3630])
+*  The unmodified Hessian and turning the line search off are now specified by different regular expressions. ({{gna task link|3630|text=see task #3630}})
-*  Splitting of the [http://www.nmr-relax.com/manual/pdb.html pdb user function] into [http://www.nmr-relax.com/manual/pdb_read.html pdb.read] and [http://www.nmr-relax.com/manual/pdb_vectors.html pdb.vectors] (these have been subsequently renamed). ([https://gna.org/task/?3838 see task #3838])
+*  Splitting of the [http://www.nmr-relax.com/manual/pdb.html pdb user function] into [http://www.nmr-relax.com/manual/pdb_read.html pdb.read] and [http://www.nmr-relax.com/manual/pdb_vectors.html pdb.vectors] (these have been subsequently renamed). ({{gna task link|3838|text=see task #3838}})
 *  Created the JOBS file to describe the roles of the relax manager positions.
 *  Removal of apply(func, args) calls from the minimisation code.

@@ Line 75: / Line 75: @@
 For reference, the following links are also part of the announcement for this release:
 * [http://wiki.nmr-relax.com/Relax_1.3.0 Official release notes]
-* [https://gna.org/forum/forum.php?forum_id=1491 Gna! news item]
+* {{gna link|url=gna.org/forum/forum.php?forum_id=1491|text=Gna! news item}}
 * [http://article.gmane.org/gmane.science.nmr.relax.announce/16 Gmane]
 * [http://www.mail-archive.com/relax-announce%40gna.org/msg00008.html Mail archive]

@@ Line 7: / Line 7: @@
 | type     = Experimental development
 | date     = 19 February 2007
 }}

← Older revision		Revision as of 07:44, 22 October 2015
Line 1:		Line 1:
	{{lowercase title}}		{{lowercase title}}
		+
		+	{{infobox relax release
		+	\| version = 1.3.0
		+	\| prev = 1.2.15
		+	\| next = 1.3.1
		+	\| type = Experimental development
		+	\| date = 19 February 2007
		+	}}

	== Description ==		== Description ==

@@ Line 1: / Line 1: @@
 {{lowercase title}}
-= Description =
+== Description ==
 <section begin=description/>
@@ Line 7: / Line 7: @@
 <section end=description/>
-= Download =
+== Download ==
 <section begin=download/>
@@ Line 13: / Line 13: @@
 <section end=download/>
-= CHANGES file =
+== CHANGES file ==
 <section begin=metadata/>
@@ Line 21: / Line 21: @@
 <section end=metadata/>
-== Features ==
+=== Features ===
 <section begin=features/>
@@ Line 40: / Line 40: @@
 <section end=features/>
-== Changes ==
+=== Changes ===
 <section begin=changes/>
@@ Line 55: / Line 55: @@
 <section end=changes/>
-== Bugfixes ==
+=== Bugfixes ===
 <section begin=bugfixes/>
@@ Line 61: / Line 61: @@
 <section end=bugfixes/>
-= Links =
+== Links ==
 <section begin=links/>
@@ Line 73: / Line 73: @@
 <section end=links/>
-= Announcements =
+== Announcements ==
 {{:relax release announcements}}
-= See also =
+== See also ==
 * [http://www.nmr-relax.com/api/1.3/ The relax 1.3 API documentation]
 {{:relax release see also}}

← Older revision		Revision as of 10:22, 26 November 2014
Line 79:		Line 79:
	= See also =		= See also =

		+	* [http://www.nmr-relax.com/api/1.3/ The relax 1.3 API documentation]
	{{:relax release see also}}		{{:relax release see also}}

@@ Line 4: / Line 4: @@
 <section begin=description/>
-This is the first release of the unstable 1.3 development line.  In addition to all the capabilities of [[relax 1.2.10]] the new features of this release include the addition of a unit test framework, preliminary support for PyMOL, the [http://www.nmr-relax.com/manual/structure_write_pdb.html creation of PDB files], the ability to [http://www.nmr-relax.com/manual/pymol_tensor_pdb.html display the diffusion tensor encoded as a PDB file using PyMOL], the ability to display the [http://www.nmr-relax.com/manual/pymol_vector_dist.html distribution of XH bond vectors] used in the analysis via a PDB file, the new user function class 'structure' containing the old user function 'pdb()' which has been split and redesigned, removal of apply(func, args) calls from the minimisation code, improved spin system selection using Boolean operators, and a few other small features, bugfixes, and program changes.  As the user function names have been and will continue to be modified please do not expect either the backwards or forwards compatibility of relax scripts written for the 1.3 relax versions.
+This is the first release of the unstable 1.3 development line.  In addition to all the capabilities of [[relax 1.2.10]] the new features of this release include the addition of a unit test framework, preliminary support for PyMOL, the [http://www.nmr-relax.com/manual/structure_write_pdb.html creation of PDB files], the ability to [http://www.nmr-relax.com/manual/pymol_tensor_pdb.html display the diffusion tensor encoded as a PDB file using PyMOL], the ability to display the [http://www.nmr-relax.com/manual/pymol_vector_dist.html distribution of XH bond vectors] used in the analysis via a PDB file, the new user function class 'structure' containing the old user function [http://www.nmr-relax.com/manual/pdb.html pdb] which has been split and redesigned, removal of apply(func, args) calls from the minimisation code, improved spin system selection using Boolean operators, and a few other small features, bugfixes, and program changes.  As the user function names have been and will continue to be modified please do not expect either the backwards or forwards compatibility of relax scripts written for the 1.3 relax versions.
 <section end=description/>
@@ Line 24: / Line 24: @@
 <section begin=features/>
-*  Implementation of the PDB geometric representation of the Brownian rotational diffusion tensor using 'structure.create_diff_tensor_pdb()'.
+*  Implementation of the PDB geometric representation of the Brownian rotational diffusion tensor using [http://www.nmr-relax.com/manual/structure_create_diff_tensor_pdb.html structure.create_diff_tensor_pdb].
 *  Added a sample script for the creation of the PDB representation of the diffusion tensor.
 *  Addition of the ability to calculate the centre of mass of the selected residues (not available as a user function).
 *  The addition of PDB writing capabilities (not available as a user function).
-*  Creation of the 'molmol.command()' user function to send Molmol commands to a running instance of Molmol.
+*  Creation of the [http://www.nmr-relax.com/manual/molmol_command.html molmol.command user function] to send Molmol commands to a running instance of Molmol.
-*  Creation of the 'molmol.ribbon()' user function to apply the Molmol ribbon style (which is equivalent to clicking on 'ribbon' in the Molmol side menu).
+*  Creation of the [http://www.nmr-relax.com/manual/molmol_ribbon.html molmol.ribbon user function] to apply the Molmol ribbon style (which is equivalent to clicking on 'ribbon' in the Molmol side menu).
-*  Creation of the 'molmol.tensor_pdb()' user function for displaying the PDB geometric object of the diffusion tensor in Molmol over a loaded structure.
+*  Creation of the [http://www.nmr-relax.com/manual/molmol_tensor_pdb.html molmol.tensor_pdb user function] for displaying the PDB geometric object of the diffusion tensor in Molmol over a loaded structure.
 *  Preliminary support for PyMOL.
-*  Creation of the 'pymol.view()' user function for launching PyMOL.
+*  Creation of the [http://www.nmr-relax.com/manual/pymol_view.html pymol.view user function] for launching PyMOL.
-*  Creation of the 'pymol.cartoon()' user function for hiding everything, showing the cartoon representation, and colouring the cartoon by secondary structure.
+*  Creation of the [http://www.nmr-relax.com/manual/pymol_cartoon.html pymol.cartoon user function] for hiding everything, showing the cartoon representation, and colouring the cartoon by secondary structure.
-*  Creation of the 'pymol.tensor_pdb()' user function, the equivalent of 'molmol.tensor_pdb()'.
+*  Creation of the [http://www.nmr-relax.com/manual/pymol_tensor_pdb.html pymol.tensor_pdb user function], the equivalent of [http://www.nmr-relax.com/manual/molmol_tensor_pdb.html molmol.tensor_pdb].
 *  A unit test framework for the test suite has been created and a few tests have been written (accessible through the --test-suite or --unit-test command line arguments).
-*  Addition of the 'structure.create_vector_dist()' user function for creating a PDB representation of the XH bond vectors of selected residues from the structure.
+*  Addition of the [http://www.nmr-relax.com/manual/structure_create_vector_dist.html structure.create_vector_dist user function] for creating a PDB representation of the XH bond vectors of selected residues from the structure.
-*  Addition of the 'pymol.vector_dist()' user function for displaying the PDB representation of the XH vector distribution overlain over the structure within PyMOL.
+*  Addition of the [http://www.nmr-relax.com/manual/pymol_vector_dist.html pymol.vector_dist user function] for displaying the PDB representation of the XH vector distribution overlain over the structure within PyMOL.
 <section end=features/>
@@ Line 43: / Line 43: @@
 <section begin=changes/>
-*  The unmodified Hessian and turning the line search off are now specified by different regular expressions. (see task #3630)
+*  The unmodified Hessian and turning the line search off are now specified by different regular expressions. ([https://gna.org/task/?3630 see task #3630])
-*  Splitting of the 'pdb()' user function into 'pdb.read()' and 'pdb.vectors()' (these have been subsequently renamed). (see task #3838)
+*  Splitting of the [http://www.nmr-relax.com/manual/pdb.html pdb user function] into [http://www.nmr-relax.com/manual/pdb_read.html pdb.read] and [http://www.nmr-relax.com/manual/pdb_vectors.html pdb.vectors] (these have been subsequently renamed). ([https://gna.org/task/?3838 see task #3838])
 *  Created the JOBS file to describe the roles of the relax manager positions.
 *  Removal of apply(func, args) calls from the minimisation code.
@@ Line 52: / Line 52: @@
 *  Redesign of the diffusion tensor data structure 'self.relax.data.diff' for the automatic calculation of diffusion tensor parameters, vectors, and matrices when parameters are set or changed.
 *  The 'pdb' user function class has been renamed to 'structure'.
-*  The 'init_data()' user function has been renamed to 'reset()'.
+*  The [http://www.nmr-relax.com/manual/init_data.html init_data user function] has been renamed to [http://www.nmr-relax.com/manual/reset.html reset].
 <section end=changes/>

@@ Line 16: / Line 16: @@
 <section begin=metadata/>
-Version 1.3.0
+Version 1.3.0 <br/>
-(19 February 2007, from /1.3)
+(19 February 2007, from /1.3) <br/>
 http://svn.gna.org/svn/relax/tags/1.3.0
 <section end=metadata/>

← Older revision		Revision as of 20:01, 10 September 2014
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	= See also =		= See also =

−	~~[[Category~~:~~Release_Notes]]~~	+	{{:relax release see also}}