Relax 2.0.0 - Revision history

Bugman: /* Links */ Fix the broken Gna! forum link by switching to {{gna link}}.

2020-10-14T11:45:56Z

Links: Fix the broken Gna! forum link by switching to {{gna link}}.

Bugman: /* Description */ Switch to a new {{gna url}} template for removing dead links.

2020-10-06T07:00:39Z

Description: Switch to a new {{gna url}} template for removing dead links.

Bugman: /* Description */ Switch to a new {{gna mailing list url}} template for removing dead links.

2020-10-06T06:15:04Z

Description: Switch to a new {{gna mailing list url}} template for removing dead links.

Bugman: Switch to the {{gna link}} template for avoiding dead links.

2020-10-06T05:41:58Z

Switch to the {{gna link}} template for avoiding dead links.

Bugman: /* References */ Switched to a labelled section transclusion for the citations.

2015-11-03T17:10:52Z

References: Switched to a labelled section transclusion for the citations.

Bugman: Added the 'manual' parameter to {{infobox relax release}}.

2015-11-03T10:41:02Z

Added the 'manual' parameter to {{infobox relax release}}.

Bugman: Increased the sectioning depth.

2015-10-22T17:59:54Z

Increased the sectioning depth.

Bugman: Added an infobox.

2015-10-21T19:41:15Z

Added an infobox.

Bugman: /* See also */ Added a link to the API documentation.

2014-11-26T10:24:46Z

See also: Added a link to the API documentation.

Bugman: /* Links */ Removed the Mail archive link.

2014-09-13T21:55:58Z

Links: Removed the Mail archive link.

@@ Line 716: / Line 716: @@
 For reference, the following links are also part of the announcement for this release:
 * [http://wiki.nmr-relax.com/Relax_2.0.0 Official release notes]
-* [https://gna.org/forum/forum.php?forum_id=2354 Gna! news item]
+* {{gna link|url=gna.org/forum/forum.php?forum_id=2354|text=Gna! news item}}
 * [http://article.gmane.org/gmane.science.nmr.relax.announce/5 Gmane]
 * [https://mail.gna.org/public/relax-announce/2012-06/msg00000.html Local archives]

@@ Line 18: / Line 18: @@
 The features of these release include a complete restructuring of the user functions so that special 'definitions' are used to automatically create the user function front ends in all UIs. This now means that all user functions are now accessible from the GUI. The help system in the prompt UI mode has been revamped and is now better formatted (with better line wrapping for MS Windows). The core of the specific analysis API has been redesigned to make it much easier for NMR spectroscopists to add their own analysis types to relax. The GUI test suite has been significantly expanded so that the GUI should now be, and remain, robust. The XML formatted relax results and save files have been redesigned and improved for both numerical accuracy and readability. Data pipes can now be grouped together in special data bundles, and analysis tabs in the GUI are now associated with a specific bundle. BMRB export (as well as import) and support for Bruker Dynamics Centre relaxation data files are now tightly integrated into the GUI. Many other improvements can be found throughout the GUI. The incredible number of changes that have gone into this release can be seen below!
-As this is the first release of a new line, a few minor bugs should be expected. All feedback is appreciated. Bugs can be reported at the official relax bug tracker through the link https://gna.org/bugs/?func=additem&group=relax. Any error messages that are not 'RelaxErrors', any strange behaviour in the GUI such as windows disappearing out the back, elements not updating, etc., or anything that does not behave exactly as you would expect should be treated as a bug!
+As this is the first release of a new line, a few minor bugs should be expected. All feedback is appreciated. Bugs can be reported at the official relax bug tracker through the link {{gna url|1=gna.org/bugs/?func=additem&group=relax}}. Any error messages that are not 'RelaxErrors', any strange behaviour in the GUI such as windows disappearing out the back, elements not updating, etc., or anything that does not behave exactly as you would expect should be treated as a bug!
 <section end=description/>

@@ Line 14: / Line 14: @@
 <section begin=description/>
-This is the first relax version of the new 2.0 line. Due to incredible number of changes to the core and large improvements visible throughout prompt and graphical user interfaces (UIs), it was decided that a brand new development line would be created. The 1.3 line will now be discontinued as it quite old - it came into existence 6 years ago (see https://mail.gna.org/public/relax-devel/2006-10/msg00053.html).
+This is the first relax version of the new 2.0 line. Due to incredible number of changes to the core and large improvements visible throughout prompt and graphical user interfaces (UIs), it was decided that a brand new development line would be created. The 1.3 line will now be discontinued as it quite old - it came into existence 6 years ago (see {{gna mailing list url|relax-devel/2006-10/msg00053.html}}.
 The features of these release include a complete restructuring of the user functions so that special 'definitions' are used to automatically create the user function front ends in all UIs. This now means that all user functions are now accessible from the GUI. The help system in the prompt UI mode has been revamped and is now better formatted (with better line wrapping for MS Windows). The core of the specific analysis API has been redesigned to make it much easier for NMR spectroscopists to add their own analysis types to relax. The GUI test suite has been significantly expanded so that the GUI should now be, and remain, robust. The XML formatted relax results and save files have been redesigned and improved for both numerical accuracy and readability. Data pipes can now be grouped together in special data bundles, and analysis tabs in the GUI are now associated with a specific bundle. BMRB export (as well as import) and support for Bruker Dynamics Centre relaxation data files are now tightly integrated into the GUI. Many other improvements can be found throughout the GUI. The incredible number of changes that have gone into this release can be seen below!

@@ Line 664: / Line 664: @@
 *  Created a sample script for BMRB data deposition.
 *  The relax data store is_empty() method now only prints to STDERR if the verbosity flag is set.
-*  Changed the behaviour of the generate_spin_id() and generate_spin_id_data_array() functions.  This is a large change affecting many parts of the code base.  The problem that this solves is the incorrect usage of the '&' character in spin IDs, tripping up on the powerful Selection object of [http://gna.org/users/macraild Chris MacRaild].  For example, the spin ID ':2&:Glu' cannot be correctly handled.  This actually matches all residues with the number 2, and all residues with the name 'Glu'.
+*  Changed the behaviour of the generate_spin_id() and generate_spin_id_data_array() functions.  This is a large change affecting many parts of the code base.  The problem that this solves is the incorrect usage of the '&' character in spin IDs, tripping up on the powerful Selection object of {{gna link|url=gna.org/users/macraild|text=Chris MacRaild}}.  For example, the spin ID ':2&:Glu' cannot be correctly handled.  This actually matches all residues with the number 2, and all residues with the name 'Glu'.
 *  The scons 'clean' target now removes *.pyo files as well.
 <section end=changes/>

@@ Line 728: / Line 728: @@
 == References ==
-<section start=references/>
+* [*d'Auvergne and Gooley, 2007] {{#lst:Citations|dAuvergneGooley07}}
-* [*d'Auvergne and Gooley, 2007] d'Auvergne, E. J. and Gooley, P. R. (2007).  Set theory formulation of the model-free problem and the diffusion seeded model-free paradigm.  ''Mol. BioSyst.'', '''3'''(7), 483–494. (DOI: [http://dx.doi.org/10.1039/b702202f 10.1039/b702202f]).
+* [*d'Auvergne and Gooley, 2008b] {{#lst:Citations|dAuvergneGooley08b}}
 <HarvardReferences />

@@ Line 8: / Line 8: @@
 | type     = Major feature
 | date     = 12 June 2012
 }}

@@ Line 10: / Line 10: @@
 }}
-= Description =
+== Description ==
 <section begin=description/>
@@ Line 20: / Line 20: @@
 <section end=description/>
-= Download =
+== Download ==
 <section begin=download/>
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 <section end=download/>
-= CHANGES file =
+== CHANGES file ==
 <section begin=metadata/>
@@ Line 34: / Line 34: @@
 <section end=metadata/>
-== Features ==
+=== Features ===
 <section begin=features/>
@@ Line 59: / Line 59: @@
 <section end=features/>
-== Changes ==
+=== Changes ===
 <section begin=changes/>
@@ Line 667: / Line 667: @@
 <section end=changes/>
-== Bugfixes ==
+=== Bugfixes ===
 <section begin=bugfixes/>
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 <section end=bugfixes/>
-= Links =
+== Links ==
 <section begin=links/>
@@ Line 721: / Line 721: @@
 <section end=links/>
-= Announcements =
+== Announcements ==
 {{:relax release announcements}}
-= References =
+== References ==
 <section start=references/>
@@ Line 733: / Line 733: @@
 <HarvardReferences />
-= See also =
+== See also ==
 * [http://www.nmr-relax.com/api/2.0/ The relax 2.0 API documentation]

← Older revision		Revision as of 19:41, 21 October 2015
Line 1:		Line 1:
	{{lowercase title}}		{{lowercase title}}
		+
		+	{{infobox relax release
		+	\| version = 2.0.0
		+	\| prev = 1.3.16
		+	\| next = 2.1.0
		+	\| keywords = Analyses, BMRB, Bruker Dynamics Centre, GUI, help system, UI, user functions
		+	\| type = Major feature
		+	\| date = 12 June 2012
		+	}}

	= Description =		= Description =

@@ Line 726: / Line 726: @@
 = See also =
 {{:relax release see also}}
 [[Category:GUI]]
 [[Category:prompt UI]]
 [[Category:User functions]]