Relax 2.2.1 - Revision history

Bugman: /* Links */ Fix the broken Gna! forum link by switching to {{gna link}}.

2020-10-14T11:36:09Z

Links: Fix the broken Gna! forum link by switching to {{gna link}}.

Bugman: Increased the sectioning depth.

2015-10-22T17:12:08Z

Increased the sectioning depth.

Bugman: Added the 'manual' parameter to {{infobox relax release}}.

2015-10-22T17:11:31Z

Added the 'manual' parameter to {{infobox relax release}}.

Bugman: Added an infobox.

2015-10-21T19:03:46Z

Added an infobox.

Bugman: /* See also */ Added a link to the API documentation.

2014-11-26T10:29:11Z

See also: Added a link to the API documentation.

Bugman: User function HTML manual links.

2014-09-11T18:45:08Z

User function HTML manual links.

Bugman: Tracker links with full descriptions.

2014-09-11T18:44:10Z

Tracker links with full descriptions.

Bugman: Created a links section.

2014-09-11T18:41:29Z

Created a links section.

Bugman: Line breaks.

2014-09-10T17:43:25Z

Line breaks.

Bugman: Transclusion of the relax release see also page.

2014-09-10T17:43:02Z

Transclusion of the relax release see also page.

@@ Line 69: / Line 69: @@
 For reference, the following links are also part of the announcement for this release:
 * [http://wiki.nmr-relax.com/Relax_2.2.1 Official release notes]
-* [https://gna.org/forum/forum.php?forum_id=2376 Gna! news item]
+* {{gna link|url=gna.org/forum/forum.php?forum_id=2376|text=Gna! news item}}
 * [http://article.gmane.org/gmane.science.nmr.relax.announce/38 Gmane]
 * [http://www.mail-archive.com/relax-announce%40gna.org/msg00034.html Mail Archive]

@@ Line 10: / Line 10: @@
 }}
-= Description =
+== Description ==
 <section begin=description/>
@@ Line 16: / Line 16: @@
 <section end=description/>
-= Download =
+== Download ==
 <section begin=download/>
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 <section end=download/>
-= CHANGES file =
+== CHANGES file ==
 <section begin=metadata/>
@@ Line 30: / Line 30: @@
 <section end=metadata/>
-== Features ==
+=== Features ===
 <section begin=features/>
@@ Line 36: / Line 36: @@
 <section end=features/>
-== Changes ==
+=== Changes ===
 <section begin=changes/>
@@ Line 49: / Line 49: @@
 <section end=changes/>
-== Bugfixes ==
+=== Bugfixes ===
 <section begin=bugfixes/>
@@ Line 64: / Line 64: @@
 <section end=bugfixes/>
-= Links =
+== Links ==
 <section begin=links/>
@@ Line 76: / Line 76: @@
 <section end=links/>
-= Announcements =
+== Announcements ==
 {{:relax release announcements}}
-= See also =
+== See also ==
 * [http://www.nmr-relax.com/api/2.2/ The relax 2.2 API documentation]
 {{:relax release see also}}

@@ Line 7: / Line 7: @@
 | type    = Quick bugfix
 | date    = 01 February 2013
 }}

← Older revision		Revision as of 19:03, 21 October 2015
Line 1:		Line 1:
	{{lowercase title}}		{{lowercase title}}
		+
		+	{{infobox relax release
		+	\| version = 2.2.1
		+	\| prev = 2.2.0
		+	\| next = 2.2.2
		+	\| type = Quick bugfix
		+	\| date = 01 February 2013
		+	}}

	= Description =		= Description =

← Older revision		Revision as of 10:29, 26 November 2014
Line 73:		Line 73:
	= See also =		= See also =

		+	* [http://www.nmr-relax.com/api/2.2/ The relax 2.2 API documentation]
	{{:relax release see also}}		{{:relax release see also}}

@@ Line 51: / Line 51: @@
 *  Fix for the bug reported as the [https://gna.org/support/?2998 support request #2998].  CONECT records pointing to non-existent atoms can now be handled.
 *  Fix for [https://gna.org/bugs/?20469 bug #20469, the failure in reading X-ray PDB files using the ScientificPython parser].  The ScientificPython Geometry.Transformation module is now distributed with relax.  Some linear algebra imports in the Geometry.TensorModule in newly used code paths have been fixed as well.
-*  Fix for [https://gna.org/bugs/?20470 bug #20470].  The structure.read_pdb user function now accepts the alt_loc argument for specifying the alternate location indicator to read.  This is used by the internal PDB reader.  The bug was caught by the Structure.test_bug_20470_alternate_location_indicator system test.
+*  Fix for [https://gna.org/bugs/?20470 bug #20470].  The [http://www.nmr-relax.com/manual/structure.read_pdb.html structure.read_pdb user function] now accepts the alt_loc argument for specifying the alternate location indicator to read.  This is used by the internal PDB reader.  The bug was caught by the Structure.test_bug_20470_alternate_location_indicator system test.
 *  Fix for [https://gna.org/bugs/?20471 bug #20471 - the is_empty() AttributeError when reading BMRB files].  The problem was that the data pipe is_empty() method was not handling structural data correctly.  The is_empty() method now belongs to the MolContainer objects rather than cdp.structure, and the object cdp.structure is not always present.
 <section end=bugfixes/>

@@ Line 31: / Line 31: @@
 <section begin=changes/>
 *  Replaced a reference to freshmeat with Freecode in the Release checklist document.  Freshmeat no longer exists and is now called Freecode (http://freecode.com/projects/nmr-relax).
-*  Created the Mf.test_bug_20464_missing_ri_data system test to catch bug #20464.  The data comes from the bug report submitted by Stanislava Panova (stpanova att gmail dot com) at https://gna.org/bugs/?20464.
+*  Created the Mf.test_bug_20464_missing_ri_data system test to catch [https://gna.org/bugs/?20464 bug #20464].  The data comes from the bug report submitted by Stanislava Panova (stpanova att gmail dot com).
-*  Created the Structure.test_bug_sr_2998_broken_conect_records system test.  This is to catch the bug reported as service request #2998 (https://gna.org/support/?2998) and is for corrupted PDB files with broken CONECT records.
+*  Created the Structure.test_bug_sr_2998_broken_conect_records system test.  This is to catch the bug reported as [https://gna.org/support/?2998 service request #2998] and is for corrupted PDB files with broken CONECT records.
-*  Created the Structure.test_bug_20469_scientific_parser_xray_records system test.  This is to catch bug #20469 (https://gna.org/bugs/?20469).
+*  Created the Structure.test_bug_20469_scientific_parser_xray_records system test.  This is to catch [https://gna.org/bugs/?20469 bug #20469].
-*  Created the Structure.test_bug_20470_alternate_location_indicator system test to catch bug #20470.  This report is at https://gna.org/bugs/?20470.
+*  Created the Structure.test_bug_20470_alternate_location_indicator system test to catch [https://gna.org/bugs/?20470 bug #20470].
 *  Created the Structure.test_alt_loc_missing system test.  This is to test that the internal relax PDB reader raises an error when a PDB file is encountered with alternate location indicators but the alt_loc argument has not been specified.
-*  Created the Bmrb.test_bug_20471_structure_present to catch bug #20471 (https://gna.org/bugs/?20471).
+*  Created the Bmrb.test_bug_20471_structure_present to catch [https://gna.org/bugs/?20471 bug #20471].
 *  Modified the bmrb.read documentation to make it clearer that the data pipe must be empty.
 <section end=changes/>
@@ Line 47: / Line 47: @@
 *  Python 3 import fixes for the GUI.
 *  Python 3 fixes for the list sort() method - this has been replaced by the builtin sorted() function.
-*  Fix for bug #20464 (https://gna.org/bugs/?20464) - the model-free analysis failure with missing relaxation data.  The problem was the previously missing data had a value of None whereas now the dictionary element can be missing.  Checks have been added to make sure the spin specific relaxation data structures have the key corresponding to the data.
+*  Fix for [https://gna.org/bugs/?20464 bug #20464 - the model-free analysis failure with missing relaxation data].  The problem was the previously missing data had a value of None whereas now the dictionary element can be missing.  Checks have been added to make sure the spin specific relaxation data structures have the key corresponding to the data.
 *  Fix for the N_state_model.test_monte_carlo_sims system test.  On certain systems, the chi2 check is too stringent.
-*  Fix for the bug reported as the support request #2998 (https://gna.org/support/?2998).  CONECT records pointing to non-existent atoms can now be handled.
+*  Fix for the bug reported as the [https://gna.org/support/?2998 support request #2998].  CONECT records pointing to non-existent atoms can now be handled.
-*  Fix for bug #20469 (https://gna.org/bugs/?20469).  This is the Failure in reading X-ray PDB files using the ScientificPython parser.  The ScientificPython Geometry.Transformation module is now distributed with relax.  Some linear algebra imports in the Geometry.TensorModule in newly used code paths have been fixed as well.
+*  Fix for [https://gna.org/bugs/?20469 bug #20469, the failure in reading X-ray PDB files using the ScientificPython parser].  The ScientificPython Geometry.Transformation module is now distributed with relax.  Some linear algebra imports in the Geometry.TensorModule in newly used code paths have been fixed as well.
-*  Fix for bug #20470 (https://gna.org/bugs/?20470).  The structure.read_pdb user function now accepts the alt_loc argument for specifying the alternate location indicator to read.  This is used by the internal PDB reader.  The bug was caught by the Structure.test_bug_20470_alternate_location_indicator system test.
+*  Fix for [https://gna.org/bugs/?20470 bug #20470].  The structure.read_pdb user function now accepts the alt_loc argument for specifying the alternate location indicator to read.  This is used by the internal PDB reader.  The bug was caught by the Structure.test_bug_20470_alternate_location_indicator system test.
-*  Fix for bug #20471 (https://gna.org/bugs/?20471) - the is_empty() AttributeError when reading BMRB files.  The problem was that the data pipe is_empty() method was not handling structural data correctly.  The is_empty() method now belongs to the MolContainer objects rather than cdp.structure, and the object cdp.structure is not always present.
+*  Fix for [https://gna.org/bugs/?20471 bug #20471 - the is_empty() AttributeError when reading BMRB files].  The problem was that the data pipe is_empty() method was not handling structural data correctly.  The is_empty() method now belongs to the MolContainer objects rather than cdp.structure, and the object cdp.structure is not always present.
 <section end=bugfixes/>

@@ Line 16: / Line 16: @@
 <section begin=metadata/>
-Version 2.2.1
+Version 2.2.1 <br/>
-(01 February 2013, from /trunk)
+(01 February 2013, from /trunk) <br/>
 http://svn.gna.org/svn/relax/tags/2.2.1
 <section end=metadata/>

← Older revision		Revision as of 17:43, 10 September 2014
Line 61:		Line 61:
	= See also =		= See also =

−	~~[[Category~~:~~Release_Notes]]~~	+	{{:relax release see also}}