Relax 2.2.2 - Revision history

Bugman: Switch to the {{gna link}} template for avoiding dead links.

2020-10-15T21:30:36Z

Switch to the {{gna link}} template for avoiding dead links.

Bugman: /* Links */ Fix the broken Gna! forum link by switching to {{gna link}}.

2020-10-14T11:32:58Z

Links: Fix the broken Gna! forum link by switching to {{gna link}}.

Bugman: /* Bugfixes */ Link fix

2015-11-03T17:12:11Z

Bugfixes: Link fix

Bugman: /* References */ Switched to a labelled section transclusion for the citations.

2015-11-03T17:09:52Z

References: Switched to a labelled section transclusion for the citations.

Bugman: Added the 'manual' parameter to {{infobox relax release}}.

2015-10-22T18:01:36Z

Added the 'manual' parameter to {{infobox relax release}}.

Bugman: Added an infobox.

2015-10-21T19:44:56Z

Added an infobox.

Bugman: Increased the sectioning depth.

2015-10-21T19:43:54Z

Increased the sectioning depth.

Bugman: /* See also */ Added a link to the API documentation.

2014-11-26T10:28:52Z

See also: Added a link to the API documentation.

Bugman: /* References */ Link fix.

2014-09-13T21:11:09Z

References: Link fix.

Bugman: Added the dauvergne_protocol refs.

2014-09-13T08:06:24Z

Added the dauvergne_protocol refs.

@@ Line 51: / Line 51: @@
 *  Addition of the generic_fns package docstring.
 *  Added a module docstring for the main relax module.
-*  Created the State.test_bug_20480 system test to catch [https://gna.org/bugs/?20480 bug #20480, the failure to load a saved relax model-free state in the GUI].  This bug was reported by [https://gna.org/users/stacy Stanislava Panova].
+*  Created the State.test_bug_20480 system test to catch [https://gna.org/bugs/?20480 bug #20480, the failure to load a saved relax model-free state in the GUI].  This bug was reported by {{gna link|url=gna.org/users/stacy|text=Stanislava Panova}}.
-*  Created the Mf.test_bug_20479_gui_final_pipe GUI test to catch [https://gna.org/bugs/?20479 bug #20479, the model-free analysis failure in the GUI after setting the protocol mode to local &tau;<sub>m</sub>].  This bug was reported by [https://gna.org/users/stacy Stanislava Panova].
+*  Created the Mf.test_bug_20479_gui_final_pipe GUI test to catch [https://gna.org/bugs/?20479 bug #20479, the model-free analysis failure in the GUI after setting the protocol mode to local &tau;<sub>m</sub>].  This bug was reported by {{gna link|url=gna.org/users/stacy|text=Stanislava Panova}}.
 *  Added a printout to the GUI test case base check_exceptions() method to explain what is happening.
 *  Large expansion of the Mf.test_bug_20479_gui_final_pipe GUI test.  Instead of loading the [https://gna.org/bugs/?20480 bug #20480] state file, now the entire GUI analysis starting from scratch and using the relaxation data files is performed remotely by the test.  This is necessary because the result of the bug is present in the state file.
@@ Line 72: / Line 72: @@
 *  Epydoc documentation fix - a circular import in the GUI code paths has been broken.  This affects the API documentation at http://www.nmr-relax.com/api/.
 *  Fix for the failed loading of states in the GUI.  This problem was caught by the State.test_bug_20480 GUI test.  If the loading of a state file fails,sometimes the relax data store can contain partial information from that file.  Now if the loading fails in the GUI, relax is reset.
-*  Fix for [https://gna.org/bugs/?20480 bug #20480, the failure to load a saved relax model-free state in the GUI].  This was reported by [https://gna.org/users/stacy Stanislava Panova].  The problem was that the state file was saved after a RelaxError occurred during the model-free analysis.  The GUI data store information states that the active data pipe is called 'final'.  But an error occurred prior to the 'final' data pipe being created.  The fix was to allow the state to be loaded even if the GUI data store information has been corrupted.
+*  Fix for [https://gna.org/bugs/?20480 bug #20480, the failure to load a saved relax model-free state in the GUI].  This was reported by {{gna link|url=gna.org/users/stacy|text=Stanislava Panova}}.  The problem was that the state file was saved after a RelaxError occurred during the model-free analysis.  The GUI data store information states that the active data pipe is called 'final'.  But an error occurred prior to the 'final' data pipe being created.  The fix was to allow the state to be loaded even if the GUI data store information has been corrupted.
-*  Fix for [https://gna.org/bugs/?20479 bug #20479 - the failure of non-fully automated model-free analyses in the GUI].  This bug was reported by [https://gna.org/users/stacy Stanislava Panova].  The problem is GUI specific and was when running each diffusion model one after the other.  The GUI was setting the base data pipe to the 'final' data pipe, which is a clear error.
+*  Fix for [https://gna.org/bugs/?20479 bug #20479 - the failure of non-fully automated model-free analyses in the GUI].  This bug was reported by {{gna link|url=gna.org/users/stacy|text=Stanislava Panova}}.  The problem is GUI specific and was when running each diffusion model one after the other.  The GUI was setting the base data pipe to the 'final' data pipe, which is a clear error.
 *  Fix for [https://gna.org/bugs/?20481 bug #20481], the bug where the dauvergne_protocol model-free auto-analysis[d'Auvergne and Gooley, 2007][d'Auvergne and Gooley, 2008] expects the prolate and oblate spheroids and ellipsoid to be optimised.  It was caught by the Mf.test_bug_20479_gui_final_pipe GUI test.
 *  Bug fix for the diffusion tensor PDB creation in the dauvergne_protocol model-free auto-analysis.  The call to the [http://www.nmr-relax.com/manual/structure_create_diff_tensor_pdb.html structure.create_diff_tensor_pdb user function] now only occurs if structural data is present.

@@ Line 83: / Line 83: @@
 For reference, the following links are also part of the announcement for this release:
 * [http://wiki.nmr-relax.com/Relax_2.2.2 Official release notes]
-* [https://gna.org/forum/forum.php?forum_id=2377 Gna! news item]
+* {{gna link|url=gna.org/forum/forum.php?forum_id=2377|text=Gna! news item}}
 * [http://article.gmane.org/gmane.science.nmr.relax.announce/39 Gmane]
 * [http://www.mail-archive.com/relax-announce%40gna.org/msg00035.html Mail Archive]

@@ Line 74: / Line 74: @@
 *  Fix for [https://gna.org/bugs/?20480 bug #20480, the failure to load a saved relax model-free state in the GUI].  This was reported by [https://gna.org/users/stacy Stanislava Panova].  The problem was that the state file was saved after a RelaxError occurred during the model-free analysis.  The GUI data store information states that the active data pipe is called 'final'.  But an error occurred prior to the 'final' data pipe being created.  The fix was to allow the state to be loaded even if the GUI data store information has been corrupted.
 *  Fix for [https://gna.org/bugs/?20479 bug #20479 - the failure of non-fully automated model-free analyses in the GUI].  This bug was reported by [https://gna.org/users/stacy Stanislava Panova].  The problem is GUI specific and was when running each diffusion model one after the other.  The GUI was setting the base data pipe to the 'final' data pipe, which is a clear error.
-*  Fix for [https://gna.org/bugs/?20481 bug #20481, the bug where the dauvergne_protocol model-free auto-analysis[d'Auvergne and Gooley, 2007][d'Auvergne and Gooley, 2008] expects the prolate and oblate spheroids and ellipsoid to be optimised].  It was caught by the Mf.test_bug_20479_gui_final_pipe GUI test.
+*  Fix for [https://gna.org/bugs/?20481 bug #20481], the bug where the dauvergne_protocol model-free auto-analysis[d'Auvergne and Gooley, 2007][d'Auvergne and Gooley, 2008] expects the prolate and oblate spheroids and ellipsoid to be optimised.  It was caught by the Mf.test_bug_20479_gui_final_pipe GUI test.
 *  Bug fix for the diffusion tensor PDB creation in the dauvergne_protocol model-free auto-analysis.  The call to the [http://www.nmr-relax.com/manual/structure_create_diff_tensor_pdb.html structure.create_diff_tensor_pdb user function] now only occurs if structural data is present.
 <section end=bugfixes/>

@@ Line 96: / Line 96: @@
 == References ==
-<section start=references/>
+* [*d'Auvergne and Gooley, 2007] {{#lst:Citations|dAuvergneGooley07}}
-* [*d'Auvergne and Gooley, 2007] d'Auvergne, E. J. and Gooley, P. R. (2007).  Set theory formulation of the model-free problem and the diffusion seeded model-free paradigm.  ''Mol. BioSyst.'', '''3'''(7), 483–494. (DOI: [http://dx.doi.org/10.1039/b702202f 10.1039/b702202f]).
+* [*d'Auvergne and Gooley, 2008] {{#lst:Citations|dAuvergneGooley08b}}
-* [*d'Auvergne and Gooley, 2008] d'Auvergne, E. J. and Gooley, P. R. (2008).  Optimisation of NMR dynamic models II.  A new methodology for the dual optimisation of the model-free parameters and the Brownian rotational diffusion tensor.  ''J. Biomol. NMR'', '''40'''(2), 121-133. (DOI: [http://dx.doi.org/10.1007/s10858-007-9213-3 10.1007/s10858-007-9213-3]).
+<HarvardReferences/>
 == See also ==

@@ Line 8: / Line 8: @@
 | type     = Minor bugfix
 | date     = 12 February 2013
 }}

← Older revision		Revision as of 19:44, 21 October 2015
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		+	{{infobox relax release
		+	\| version = 2.2.2
		+	\| prev = 2.2.1
		+	\| next = 2.2.3
		+	\| keywords = Model-free analysis
		+	\| type = Minor bugfix
		+	\| date = 12 February 2013
		+	}}

	== Description ==		== Description ==

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 <HarvardReferences />
-= See also =
+== See also ==
 * [http://www.nmr-relax.com/api/2.2/ The relax 2.2 API documentation]
 {{:relax release see also}}
 [[Category:Model-free analysis]]