Relax 3.2.1 - Revision history

Bugman: /* Links */ Fix the broken Gna! forum link by switching to {{gna link}}.

2020-10-08T20:46:02Z

Links: Fix the broken Gna! forum link by switching to {{gna link}}.

Bugman: /* References */ Switched to a labelled section transclusion for the citations, and removed the
tags.

2015-11-03T19:30:29Z

References: Switched to a labelled section transclusion for the citations, and removed the <section> tags.

Bugman: Added the 'keywords' and 'manual' parameters to {{infobox relax release}}.

2015-10-22T17:32:30Z

Added the 'keywords' and 'manual' parameters to {{infobox relax release}}.

Bugman: Increased the sectioning depth.

2015-10-22T17:31:03Z

Increased the sectioning depth.

Bugman: Added an infobox.

2015-10-21T16:55:47Z

Added an infobox.

Bugman: /* See also */ Added a link to the API documentation.

2014-11-26T10:35:17Z

See also: Added a link to the API documentation.

Bugman: /* Links */ Changed the link text and formatting and transcluded the Softpedia page.

2014-10-10T08:00:22Z

Links: Changed the link text and formatting and transcluded the Softpedia page.

Bugman: Fix for the :Category:relaxation dispersion analysis link.

2014-09-13T21:20:01Z

Fix for the Category:relaxation dispersion analysis link.

Bugman: /* Changes */ Attempt at fixing a problematic line of text breaking the summary pages of all relax versions.

2014-09-11T19:09:54Z

Changes: Attempt at fixing a problematic line of text breaking the summary pages of all relax versions.

Bugman: Transclusion of the relax release see also page.

2014-09-10T16:35:05Z

Transclusion of the relax release see also page.

@@ Line 80: / Line 80: @@
 * [http://wiki.nmr-relax.com/Relax_3.2.1 Official release notes on the relax wiki].
-* [https://gna.org/forum/forum.php?forum_id=2462 Gna! news item].
+* {{gna link|url=gna.org/forum/forum.php?forum_id=2462|text=Gna! news item}}.
 * [http://article.gmane.org/gmane.science.nmr.relax.announce/55 Gmane mailing list archive].
 * [http://www.mail-archive.com/relax-announce%40gna.org/msg00048.html The Mail Archive].

@@ Line 96: / Line 96: @@
 == References ==
-<section start=references/>
+* [*Baldwin 2014] {{#lst:Citations|Baldwin14}}
 <HarvardReferences />
 == See also ==

@@ Line 2: / Line 2: @@
 {{infobox relax release
-| version = 3.2.1
+| version  = 3.2.1
-| prev    = 3.2.0
+| prev     = 3.2.0
-| next    = 3.2.2
+| next     = 3.2.2
-| type    = Major bugfix
+| keywords = [[B14]] and [[B14 full]] relaxation dispersion models, [[NS CPMG 2-site expanded]] model, [http://www.nmr-relax.com/manual/structure_delete.html structure.delete user function]
-| date    = 23 May 2014
+| type     = Major bugfix
 }}

@@ Line 9: / Line 9: @@
 }}
-= Description =
+== Description ==
 <section begin=description/>
@@ Line 15: / Line 15: @@
 <section end=description/>
-= Download =
+== Download ==
 <section begin=download/>
@@ Line 21: / Line 21: @@
 <section end=download/>
-= CHANGES file =
+== CHANGES file ==
 <section begin=metadata/>
@@ Line 29: / Line 29: @@
 <section end=metadata/>
-== Features ==
+=== Features ===
 <section begin=features/>
@@ Line 35: / Line 35: @@
 <section end=features/>
-== Changes ==
+=== Changes ===
 <section begin=changes/>
@@ Line 63: / Line 63: @@
 <section end=changes/>
-== Bugfixes ==
+=== Bugfixes ===
 <section begin=bugfixes/>
@@ Line 72: / Line 72: @@
 <section end=bugfixes/>
-= Links =
+== Links ==
 <section begin=links/>
@@ Line 87: / Line 87: @@
 <section end=links/>
-= Announcements =
+== Announcements ==
 {{:relax release announcements}}
-= References =
+== References ==
 <section start=references/>
@@ Line 100: / Line 100: @@
-= See also =
+== See also ==
 * [http://www.nmr-relax.com/api/3.2/ The relax 3.2 API documentation]
 {{:relax release see also}}

← Older revision		Revision as of 16:55, 21 October 2015
Line 1:		Line 1:
	{{lowercase title}}		{{lowercase title}}
		+
		+	{{infobox relax release
		+	\| version = 3.2.1
		+	\| prev = 3.2.0
		+	\| next = 3.2.2
		+	\| type = Major bugfix
		+	\| date = 23 May 2014
		+	}}

	= Description =		= Description =

← Older revision		Revision as of 10:35, 26 November 2014
Line 94:		Line 94:
	= See also =		= See also =

		+	* [http://www.nmr-relax.com/api/3.2/ The relax 3.2 API documentation]
	{{:relax release see also}}		{{:relax release see also}}

@@ Line 67: / Line 67: @@
 <section begin=links/>
-For reference, the following links are also part of the announcement for this release:
+For reference, the announcement for this release can also be found at following links:
 * [http://wiki.nmr-relax.com/Relax_3.2.1 Official release notes]
-* [https://gna.org/forum/forum.php?forum_id=2462 Gna! news item]
+* [http://wiki.nmr-relax.com/Relax_3.2.1 Official release notes on the relax wiki].
-* [http://article.gmane.org/gmane.science.nmr.relax.announce/55 Gmane]
+* [https://gna.org/forum/forum.php?forum_id=2462 Gna! news item].
-* [http://www.mail-archive.com/relax-announce%40gna.org/msg00048.html Mail Archive]
+* [http://article.gmane.org/gmane.science.nmr.relax.announce/55 Gmane mailing list archive].
-* [https://mail.gna.org/public/relax-announce/2014-05/msg00001.html Local archives]
+* [http://www.mail-archive.com/relax-announce%40gna.org/msg00048.html The Mail Archive].
-* [http://marc.info/?l=relax-announce&m=140105764428563&w=2 MARC]
+* [https://mail.gna.org/public/relax-announce/2014-05/msg00001.html Local archives].
 <section end=links/>

@@ Line 4: / Line 4: @@
 <section begin=description/>
-This is a major bugfix release which includes the equations for the [[B14]] and [[B14 full]] [[:Category:relaxation dispersion|relaxation dispersion]] models [Baldwin 2014] introduced with [[relax 2.2.0|relax version 3.2.0]], now being calculated correctly, the [[NS CPMG 2-site expanded]] model correctly handling edge cases where no exchange is expected, and the [http://www.nmr-relax.com/manual/structure_delete.html structure.delete user function] correctly operating when multiple models are loaded into the data store.
+This is a major bugfix release which includes the equations for the [[B14]] and [[B14 full]] [[:Category:relaxation dispersion analysis|relaxation dispersion]] models [Baldwin 2014] introduced with [[relax 2.2.0|relax version 3.2.0]], now being calculated correctly, the [[NS CPMG 2-site expanded]] model correctly handling edge cases where no exchange is expected, and the [http://www.nmr-relax.com/manual/structure_delete.html structure.delete user function] correctly operating when multiple models are loaded into the data store.
 <section end=description/>

@@ Line 47: / Line 47: @@
 *  Created the test_ns_cpmg_2site_expanded_no_rex8() relaxation dispersion unit test.  This is a demonstration, showing the [[NS CPMG 2-site expanded]] model with no exchange when k<sub>ex</sub> = 1e<sup>5</sup>.  I.e. when the motion is too fast for exchange to be observed.  This test should be used for all dispersion models to make sure that they model this edge case correctly as well.  This follows from http://article.gmane.org/gmane.science.nmr.relax.devel/5906.
 *  Attempt at fixing [https://gna.org/bugs/?22071 bug #22071, the relax unit test and system test not functioning].  The fix here is that the git commands to show the current subversion revision number only works when run from the relax base directory, or one of the subdirectories.  This should now be fixed, as the pipe running the command will first 'cd' to the relax base directory.
-*  Another attempt at fixing [https://gna.org/bugs/?22071 bug #22071, the relax unit test and system test not functioning].  This time the complicated shell command "cd %s; git svn find-rev $(git rev-parse HEAD)" has been replaced with "cd %s; git svn info".
+*  Another attempt at fixing [https://gna.org/bugs/?22071 bug #22071, the relax unit test and system test not functioning].  <nowiki>This time the complicated shell command "cd %s; git svn find-rev $(git rev-parse HEAD)" has been replaced with "cd %s; git svn info".</nowiki>
 *  Changed most default dispersion parameter values to avoid edge cases where there is no exchange.  The &Delta;&omega; parameters were all 0.0 and k<sub>ex</sub> 1e<sup>5</sup>, both of which result in no exchange.  If this is ever used for an optimisation starting point - which it never should, apart from development, test suite, and debugging purposes - then the optimisation algorithm will have a very hard time recovering.  The p<sub>A</sub> parameter has been changed to 0.90 to set it to a reasonable value while still staying far away from the no exchange condition of p<sub>A</sub> = 1.0.  This follows from http://article.gmane.org/gmane.science.nmr.relax.devel/5917.
 *  Fixes for 3 dispersion system tests for the change in default parameter values.  The default values are used in the auto-analysis in the test suite to avoid the grid search.  The changed values affected the optimisation of two spins from Flemming Hansen's data located at test_suite/shared_data/dispersion/Hansen/, residue 4 used as an example of no exchange and residue 70 used as an example where data is only available at one field.  The system test Relax_disp.test_set_grid_r20_from_min_r2eff_cpmg was also modified as it was directly checking these default values.

← Older revision		Revision as of 16:35, 10 September 2014
Line 91:		Line 91:
	= See also =		= See also =

−	[[relax release ~~descriptions]]~~	+	{{:relax release see also}}
−	~~[[Category:Release_Notes]]~~