Relax 3.3.9 - Revision history

Bugman: Switch to the {{gna task link}} template to remove dead Gna! links.

2020-10-16T13:43:18Z

Switch to the {{gna task link}} template to remove dead Gna! links.

Bugman: /* Links */ Fix the broken Gna! forum link by switching to {{gna link}}.

2020-10-08T20:42:31Z

Links: Fix the broken Gna! forum link by switching to {{gna link}}.

Bugman: Added the 'keywords' and 'manual' parameters to {{infobox relax release}}.

2015-10-22T13:52:10Z

Added the 'keywords' and 'manual' parameters to {{infobox relax release}}.

Bugman: Increased the sectioning depth.

2015-10-21T21:00:10Z

Increased the sectioning depth.

Bugman: Infobox renaming fix.

2015-10-21T16:48:45Z

Infobox renaming fix.

Bugman: Added the 'type' and 'date' parameters to the infobox.

2015-10-21T15:34:44Z

Added the 'type' and 'date' parameters to the infobox.

Bugman: Added the previous and next relax versions to the {{relax release infobox}}.

2015-10-21T15:06:12Z

Added the previous and next relax versions to the {{relax release infobox}}.

Bugman: Added an initial {{relax release infobox}} for testing.

2015-10-21T14:09:12Z

Added an initial {{relax release infobox}} for testing.

Bugman: /* Links */ Fix for the MARC link.

2015-10-02T08:46:03Z

Links: Fix for the MARC link.

Bugman: /* Links */ Updated all of the links for relax 3.3.9 (by guessing).

2015-10-01T12:28:56Z

Links: Updated all of the links for relax 3.3.9 (by guessing).

@@ Line 43: / Line 43: @@
 <section begin=changes/>
-* Wrote a method to store parameter data and dispersion curves, for the protocol of repeated CPMG analysis.  This is to prepare for analysis in other programs.  The method loops through the data pipes, and writes the data out.  It then writes a bash script that will concatenate the data in an matrix array style, for reading and processing in other programs.  [https://gna.org/task/?7826 Task #7826: Write an Python class for the repeated analysis of dispersion data].
+* Wrote a method to store parameter data and dispersion curves, for the protocol of repeated CPMG analysis.  This is to prepare for analysis in other programs.  The method loops through the data pipes, and writes the data out.  It then writes a bash script that will concatenate the data in an matrix array style, for reading and processing in other programs.  {{gna task link|7826|text=Task #7826: Write an Python class for the repeated analysis of dispersion data}}.
-* Added to write out a collection script for &chi;<sup>2</sup> and rate parameters.  [https://gna.org/task/?7826 Task #7826: Write an Python class for the repeated analysis of dispersion data].
+* Added to write out a collection script for &chi;<sup>2</sup> and rate parameters.  {{gna task link|7826|text=Task #7826: Write an Python class for the repeated analysis of dispersion data}}.
-* In the collection bash script, removes spins which have not been fitted.  [https://gna.org/task/?7826 Task #7826: Write an Python class for the repeated analysis of dispersion data].
+* In the collection bash script, removes spins which have not been fitted.  {{gna task link|7826|text=Task #7826: Write an Python class for the repeated analysis of dispersion data}}.
-* Fix for use of " instead of ' in bash script.  [https://gna.org/task/?7826 Task #7826: Write an Python class for the repeated analysis of dispersion data].
+* Fix for use of " instead of ' in bash script.  {{gna task link|7826|text=Task #7826: Write an Python class for the repeated analysis of dispersion data}}.
-* Adding option to [http://www.nmr-relax.com/api/3.3/auto_analyses.relax_disp_repeat_cpmg.Relax_disp_rep-class.html#minimise_execute minimise class function], to perform Monte Carlo error analysis.  [https://gna.org/task/?7826 Task #7826: Write an Python class for the repeated analysis of dispersion data].
+* Adding option to [http://www.nmr-relax.com/api/3.3/auto_analyses.relax_disp_repeat_cpmg.Relax_disp_rep-class.html#minimise_execute minimise class function], to perform Monte Carlo error analysis.  {{gna task link|7826|text=Task #7826: Write an Python class for the repeated analysis of dispersion data}}.
-* Printout when minimising Monte Carlo simulations.  [https://gna.org/task/?7826 Task #7826: Write an Python class for the repeated analysis of dispersion data].
+* Printout when minimising Monte Carlo simulations.  {{gna task link|7826|text=Task #7826: Write an Python class for the repeated analysis of dispersion data}}.
 * Added additional test to [http://www.nmr-relax.com/api/3.3/test_suite.system_tests.relax_disp.Relax_disp-class.html#test_bug_23186_cluster_error_calc_dw system test Relax_disp.test_bug_23186_cluster_error_calc_dw()] to prove that Bug #23619 is invalid.  [https://gna.org/bugs/?23619 Bug #23619: Stored chi2 sim values from Monte Carlo simulations does not equal normal chi2 values].
-* Small fix for the shell script to collect data files, and not use the program "column" in the end.  The line width becomes to large to handle for column.  [https://gna.org/task/?7826 Task #7826: Write an Python class for the repeated analysis of dispersion data].
+* Small fix for the shell script to collect data files, and not use the program "column" in the end.  The line width becomes to large to handle for column.  {{gna task link|7826|text=Task #7826: Write an Python class for the repeated analysis of dispersion data}}.
 * Added a unit test that triggers the bug.  Test added in [http://www.nmr-relax.com/api/3.3/test_suite.unit_tests.spin_testing_base.Spin_base_class-class.html#test_delete_spin_all test_delete_spin_all], and can be accessed with: relax -u _pipe_control.test_spin.  [https://gna.org/bugs/?23642 Bug #23642: When deleting all spins for a residue, an empty placeholder is where select=True].
 * Added sample data and analysis script, that will eventually show that there is not much difference in the sample statistics used for comparing the output of two very similar datasets.  This is a multiple comparison test with many T-tests at once, where the familywise error is controlled by the Holm method.  Even if the values are close to equal, and within the standard deviation, this procedure will reject up to 20% of the null hypothesis.  This is not deemed as a suitable method.  [https://gna.org/bugs/?23644 Bug #23644: monte_carlo.error_analysis() does not update the mean value/expectation value from simulations].
@@ Line 62: / Line 62: @@
 * Created a simple unit test for the new [http://www.nmr-relax.com/api/3.3/lib.statistics-module.html#geometric_mean lib.statistics.geometric_mean() function].
 * Added a unit test for the new [http://www.nmr-relax.com/api/3.3/lib.statistics-module.html#geometric_std lib.statistics.geometric_std() function].
-* Made a summarize function to compare results.  [https://gna.org/task/?7826 Task #7826: Write an Python class for the repeated analysis of dispersion data].
+* Made a summarize function to compare results.  {{gna task link|7826|text=Task #7826: Write an Python class for the repeated analysis of dispersion data}}.
 <section end=changes/>

@@ Line 77: / Line 77: @@
 * [http://wiki.nmr-relax.com/Relax_3.3.9 Official release notes on the relax wiki].
-* [https://gna.org/forum/forum.php?forum_id=2513 Gna! news item].
+* {{gna link|url=gna.org/forum/forum.php?forum_id=2513|text=Gna! news item}}.
 * [http://article.gmane.org/gmane.science.nmr.relax.announce/67 Gmane mailing list archive].
 * [http://www.mail-archive.com/relax-announce%40gna.org/msg00058.html The Mail Archive].

@@ Line 2: / Line 2: @@
 {{infobox relax release
-| version = 3.3.9
+| version  = 3.3.9
-| prev    = 3.3.8
+| prev     = 3.3.8
-| next    = 4.0.0
+| next     = 4.0.0
-| type    = Minor feature
+| keywords = N-state model, relaxation dispersion
-| date    = 30 September 2015
+| type     = Minor feature
 }}

@@ Line 9: / Line 9: @@
 }}
-= Description =
+== Description ==
 <section begin=description/>
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 <section end=description/>
-= Download =
+== Download ==
 <section begin=download/>
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 <section end=download/>
-= CHANGES file =
+== CHANGES file ==
 <section begin=metadata/>
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 <section end=metadata/>
-== Features ==
+=== Features ===
 <section begin=features/>
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 <section end=features/>
-== Changes ==
+=== Changes ===
 <section begin=changes/>
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 <section end=changes/>
-== Bugfixes ==
+=== Bugfixes ===
 <section begin=bugfixes/>
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 <section end=bugfixes/>
-= Links =
+== Links ==
 <section begin=links/>
@@ Line 84: / Line 84: @@
 <section end=links/>
-= Announcements =
+== Announcements ==
 {{:relax release announcements}}
-= See also =
+== See also ==
 * [http://www.nmr-relax.com/api/3.3/ The relax 3.3 API documentation]
 {{:relax release see also}}
 [[Category:Relaxation dispersion analysis]]

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 {{lowercase title}}
-{{relax release infobox
+{{infobox relax release
 | version = 3.3.9
 | prev    = 3.3.8

← Older revision		Revision as of 14:09, 21 October 2015
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	{{lowercase title}}		{{lowercase title}}
		+
		+	{{relax release infobox
		+	\| version = 3.3.9
		+	}}

	= Description =		= Description =

@@ Line 71: / Line 71: @@
 * [http://www.mail-archive.com/relax-announce%40gna.org/msg00058.html The Mail Archive].
 * [https://mail.gna.org/public/relax-announce/2015-10/msg00000.html Local archives].
-* [https://marc.info/?l=relax-announce&m=142628131518606&w=2 Mailing list ARChives (MARC)].
+* [https://marc.info/?l=relax-announce&m=144376869310288&w=2 Mailing list ARChives (MARC)].
 {{:Softpedia}}