Relax 4.1.3 - Revision history

Bugman: Forward link to the 5.0.0 release.

2020-08-26T10:20:15Z

Forward link to the 5.0.0 release.

Bugman: Corrected the mailing list message link.

2019-06-14T11:13:34Z

Corrected the mailing list message link.

Bugman: Conversion of the direct links.

2019-06-14T10:06:00Z

Conversion of the direct links.

Bugman: Added `tags for better formatting.`


2019-06-14T10:04:51Z
Added <code> tags for better formatting.

				
				
				
				
				
				← Older revision
				Revision as of 10:04, 14 June 2019
				
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  * Test suite: New system test to catch the failure of reading newer Bruker DC NOE data files.  The system test is [http://www.nmr-relax.com/api/4.1/test_suite.system_tests.bruker.Bruker-class.html#test_bug_15_NOE_read_fail Bruker.test_bug_15_NOE_read_fail] and it catches [https://sourceforge.net/p/nmr-relax/tickets/15/ bug #15].  The test uses truncated data from Stefano Ciurli as attached to the bug report.   * Test suite: New system test to catch the failure of reading newer Bruker DC NOE data files.  The system test is [http://www.nmr-relax.com/api/4.1/test_suite.system_tests.bruker.Bruker-class.html#test_bug_15_NOE_read_fail Bruker.test_bug_15_NOE_read_fail] and it catches [https://sourceforge.net/p/nmr-relax/tickets/15/ bug #15].  The test uses truncated data from Stefano Ciurli as attached to the bug report.
  * Bruker DC: Silence the warnings about spin names already existing.  The user does not need to see such warnings.   * Bruker DC: Silence the warnings about spin names already existing.  The user does not need to see such warnings.
− * Travis CI config: Explicitly set 'trusty' as the distribution name for the default images.  In the support request titled "Failure of GUI testing via xvfb" (https://support.travis-ci.com/hc/en-us/requests/7654), the Travis CI support staff suggested that we explicitly set 'dist: trusty'. + * Travis CI config: Explicitly set <code>trusty</code> as the distribution name for the default images.  In the support request titled "Failure of GUI testing via xvfb" (https://support.travis-ci.com/hc/en-us/requests/7654), the Travis CI support staff suggested that we explicitly set <code>dist: trusty</code>.
− * Bruker DC: A different way to silence the warnings about spin names already existing.  The previous attempt at setting the force flag to True was causing failures in a number of system tests.  Therefore a new flag 'warn_flag' has been added to [http://www.nmr-relax.com/api/4.1/pipe_control.mol_res_spin-module.html#name_spin pipe_control.mol_res_spin.name_spin()] to allow warnings to be explicitly silenced. + * Bruker DC: A different way to silence the warnings about spin names already existing.  The previous attempt at setting the force flag to <code>True</code> was causing failures in a number of system tests.  Therefore a new flag <code>warn_flag</code> has been added to [http://www.nmr-relax.com/api/4.1/pipe_control.mol_res_spin-module.html#name_spin pipe_control.mol_res_spin.name_spin()] to allow warnings to be explicitly silenced.
  * Travis CI config: Use Xenial for running all tests on Linux and Python 2.7.  This is from the support request titled "Failure of GUI testing via xvfb" (https://support.travis-ci.com/hc/en-us/requests/7654).   * Travis CI config: Use Xenial for running all tests on Linux and Python 2.7.  This is from the support request titled "Failure of GUI testing via xvfb" (https://support.travis-ci.com/hc/en-us/requests/7654).
− * Travis CI config: Manual support for old SciPy versions on Python 2.7.  SciPy 1.3.0 now requires Python &ge; 3.5.  Therefore the OLD_MATPLOTLIB variable has been renamed to OLD_PY2_PACKAGES and, when set, is now used to install old matplotlib and scipy versions when using Python 2.7. + * Travis CI config: Manual support for old SciPy versions on Python 2.7.  SciPy 1.3.0 now requires Python &ge; 3.5.  Therefore the <code>OLD_MATPLOTLIB</code> variable has been renamed to <code>OLD_PY2_PACKAGES</code> and, when set, is now used to install old matplotlib and scipy versions when using Python 2.7.
− * Travis CI config: Deactivate the Mac OS X updates to avoid timeouts.  The 'brew update' and 'brew upgrade python3' take up half of the build time for the Mac OS X target.  This large amount of time sometimes causes this build to hit the Travis CI time limits. + * Travis CI config: Deactivate the Mac OS X updates to avoid timeouts.  The <code>brew update</code> and <code>brew upgrade python3</code> take up half of the build time for the Mac OS X target.  This large amount of time sometimes causes this build to hit the Travis CI time limits.
  <section end=changes/>   <section end=changes/>
    
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  <section begin=bugfixes/>   <section begin=bugfixes/>
− * Bruker DC: Support for handling newer versions of the NOE data file.  This fixes [https://sourceforge.net/p/nmr-relax/tickets/15/ bug #15], the failure to read newer versions of the Bruker DC NOE data files.  This was simply a parsing issue as the NOE column is now "NOE [ ]" whereas previous DC versions used the text "NOE" or "NOE [none]". + * Bruker DC: Support for handling newer versions of the NOE data file.  This fixes [https://sourceforge.net/p/nmr-relax/tickets/15/ bug #15], the failure to read newer versions of the Bruker DC NOE data files.  This was simply a parsing issue as the NOE column is now <code>NOE [ ]</code> whereas previous DC versions used the text <code>NOE</code> or <code>NOE [none]</code>.
  <section end=bugfixes/>   <section end=bugfixes/>



Bugman: Extensive links to the API documentation.
2019-06-14T09:59:21Z
Extensive links to the API documentation.

				
				
				
				
				
				← Older revision
				Revision as of 09:59, 14 June 2019
				
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  * Release checklist document: Minor improvements to match the practical aspects of the release.   * Release checklist document: Minor improvements to match the practical aspects of the release.
  * User manual: Proper abbreviation of the "Quarterly Reviews of Biophysics" journal name.   * User manual: Proper abbreviation of the "Quarterly Reviews of Biophysics" journal name.
− * Test suite: New system test to catch the failure of reading newer Bruker DC NOE data files.  The system test is Bruker.test_bug_15_NOE_read_fail and it catches [https://sourceforge.net/p/nmr-relax/tickets/15/ bug #15].  The test uses truncated data from Stefano Ciurli as attached to the bug report. + * Test suite: New system test to catch the failure of reading newer Bruker DC NOE data files.  The system test is [http://www.nmr-relax.com/api/4.1/test_suite.system_tests.bruker.Bruker-class.html#test_bug_15_NOE_read_fail Bruker.test_bug_15_NOE_read_fail] and it catches [https://sourceforge.net/p/nmr-relax/tickets/15/ bug #15].  The test uses truncated data from Stefano Ciurli as attached to the bug report.
  * Bruker DC: Silence the warnings about spin names already existing.  The user does not need to see such warnings.   * Bruker DC: Silence the warnings about spin names already existing.  The user does not need to see such warnings.
  * Travis CI config: Explicitly set 'trusty' as the distribution name for the default images.  In the support request titled "Failure of GUI testing via xvfb" (https://support.travis-ci.com/hc/en-us/requests/7654), the Travis CI support staff suggested that we explicitly set 'dist: trusty'.   * Travis CI config: Explicitly set 'trusty' as the distribution name for the default images.  In the support request titled "Failure of GUI testing via xvfb" (https://support.travis-ci.com/hc/en-us/requests/7654), the Travis CI support staff suggested that we explicitly set 'dist: trusty'.
− * Bruker DC: A different way to silence the warnings about spin names already existing.  The previous attempt at setting the force flag to True was causing failures in a number of system tests.  Therefore a new flag 'warn_flag' has been added to pipe_control.mol_res_spin.name_spin() to allow warnings to be explicitly silenced. + * Bruker DC: A different way to silence the warnings about spin names already existing.  The previous attempt at setting the force flag to True was causing failures in a number of system tests.  Therefore a new flag 'warn_flag' has been added to [http://www.nmr-relax.com/api/4.1/pipe_control.mol_res_spin-module.html#name_spin pipe_control.mol_res_spin.name_spin()] to allow warnings to be explicitly silenced.
  * Travis CI config: Use Xenial for running all tests on Linux and Python 2.7.  This is from the support request titled "Failure of GUI testing via xvfb" (https://support.travis-ci.com/hc/en-us/requests/7654).   * Travis CI config: Use Xenial for running all tests on Linux and Python 2.7.  This is from the support request titled "Failure of GUI testing via xvfb" (https://support.travis-ci.com/hc/en-us/requests/7654).
  * Travis CI config: Manual support for old SciPy versions on Python 2.7.  SciPy 1.3.0 now requires Python &ge; 3.5.  Therefore the OLD_MATPLOTLIB variable has been renamed to OLD_PY2_PACKAGES and, when set, is now used to install old matplotlib and scipy versions when using Python 2.7.   * Travis CI config: Manual support for old SciPy versions on Python 2.7.  SciPy 1.3.0 now requires Python &ge; 3.5.  Therefore the OLD_MATPLOTLIB variable has been renamed to OLD_PY2_PACKAGES and, when set, is now used to install old matplotlib and scipy versions when using Python 2.7.



Bugman: Converted all symbols to use wiki formatting.
2019-06-14T09:55:46Z
Converted all symbols to use wiki formatting.

				
				
				
				
				
				← Older revision
				Revision as of 09:55, 14 June 2019
				
Line 49:
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  * Bruker DC: A different way to silence the warnings about spin names already existing.  The previous attempt at setting the force flag to True was causing failures in a number of system tests.  Therefore a new flag 'warn_flag' has been added to pipe_control.mol_res_spin.name_spin() to allow warnings to be explicitly silenced.   * Bruker DC: A different way to silence the warnings about spin names already existing.  The previous attempt at setting the force flag to True was causing failures in a number of system tests.  Therefore a new flag 'warn_flag' has been added to pipe_control.mol_res_spin.name_spin() to allow warnings to be explicitly silenced.
  * Travis CI config: Use Xenial for running all tests on Linux and Python 2.7.  This is from the support request titled "Failure of GUI testing via xvfb" (https://support.travis-ci.com/hc/en-us/requests/7654).   * Travis CI config: Use Xenial for running all tests on Linux and Python 2.7.  This is from the support request titled "Failure of GUI testing via xvfb" (https://support.travis-ci.com/hc/en-us/requests/7654).
− * Travis CI config: Manual support for old SciPy versions on Python 2.7.  SciPy 1.3.0 now requires Python >= 3.5.  Therefore the OLD_MATPLOTLIB variable has been renamed to OLD_PY2_PACKAGES and, when set, is now used to install old matplotlib and scipy versions when using Python 2.7. + * Travis CI config: Manual support for old SciPy versions on Python 2.7.  SciPy 1.3.0 now requires Python &ge; 3.5.  Therefore the OLD_MATPLOTLIB variable has been renamed to OLD_PY2_PACKAGES and, when set, is now used to install old matplotlib and scipy versions when using Python 2.7.
  * Travis CI config: Deactivate the Mac OS X updates to avoid timeouts.  The 'brew update' and 'brew upgrade python3' take up half of the build time for the Mac OS X target.  This large amount of time sometimes causes this build to hit the Travis CI time limits.   * Travis CI config: Deactivate the Mac OS X updates to avoid timeouts.  The 'brew update' and 'brew upgrade python3' take up half of the build time for the Mac OS X target.  This large amount of time sometimes causes this build to hit the Travis CI time limits.
  <section end=changes/>   <section end=changes/>



Bugman: /* Changes */
2019-06-14T09:54:29Z
Changes

				
				
				
				
				
				← Older revision
				Revision as of 09:54, 14 June 2019
				
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  <section begin=changes/>   <section begin=changes/>
−  FSF Copyright Validation configuration: Blacklisted the PDF user manual.  This allows the checking of relax tags to pass. + * FSF Copyright Validation configuration: Blacklisted the PDF user manual.  This allows the checking of relax tags to pass.
  * Release checklist document: Describe the relax fork of latex2html.   * Release checklist document: Describe the relax fork of latex2html.
  * API manual: No longer raise errors when parsing the pystarlib docstrings.   * API manual: No longer raise errors when parsing the pystarlib docstrings.



Bugman: Converted all of the tracker links to wiki format.
2019-06-14T09:51:32Z
Converted all of the tracker links to wiki format.

				
				
				
				
				
				← Older revision
				Revision as of 09:51, 14 June 2019
				
Line 44:
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  * Release checklist document: Minor improvements to match the practical aspects of the release.   * Release checklist document: Minor improvements to match the practical aspects of the release.
  * User manual: Proper abbreviation of the "Quarterly Reviews of Biophysics" journal name.   * User manual: Proper abbreviation of the "Quarterly Reviews of Biophysics" journal name.
− * Test suite: New system test to catch the failure of reading newer Bruker DC NOE data files.  The system test is Bruker.test_bug_15_NOE_read_fail and it catches bug #15 (https://sourceforge.net/p/nmr-relax/tickets/15/).  The test uses truncated data from Stefano Ciurli as attached to the bug report. + * Test suite: New system test to catch the failure of reading newer Bruker DC NOE data files.  The system test is Bruker.test_bug_15_NOE_read_fail and it catches [https://sourceforge.net/p/nmr-relax/tickets/15/ bug #15].  The test uses truncated data from Stefano Ciurli as attached to the bug report.
  * Bruker DC: Silence the warnings about spin names already existing.  The user does not need to see such warnings.   * Bruker DC: Silence the warnings about spin names already existing.  The user does not need to see such warnings.
  * Travis CI config: Explicitly set 'trusty' as the distribution name for the default images.  In the support request titled "Failure of GUI testing via xvfb" (https://support.travis-ci.com/hc/en-us/requests/7654), the Travis CI support staff suggested that we explicitly set 'dist: trusty'.   * Travis CI config: Explicitly set 'trusty' as the distribution name for the default images.  In the support request titled "Failure of GUI testing via xvfb" (https://support.travis-ci.com/hc/en-us/requests/7654), the Travis CI support staff suggested that we explicitly set 'dist: trusty'.
Line 56:
Line 56:
    
  <section begin=bugfixes/>   <section begin=bugfixes/>
− * Bruker DC: Support for handling newer versions of the NOE data file.  This fixes bug #15 (https://sourceforge.net/p/nmr-relax/tickets/15/), the failure to read newer versions of the Bruker DC NOE data files.  This was simply a parsing issue as the NOE column is now "NOE [ ]" whereas previous DC versions used the text "NOE" or "NOE [none]". + * Bruker DC: Support for handling newer versions of the NOE data file.  This fixes [https://sourceforge.net/p/nmr-relax/tickets/15/ bug #15], the failure to read newer versions of the Bruker DC NOE data files.  This was simply a parsing issue as the NOE column is now "NOE [ ]" whereas previous DC versions used the text "NOE" or "NOE [none]".
  <section end=bugfixes/>   <section end=bugfixes/>
    



Bugman: /* Bugfixes */ Copied the bugfix list from the CHANGES file.
2019-06-14T09:49:13Z
Bugfixes:  Copied the bugfix list from the CHANGES file.

				
				
				
				
				
				← Older revision
				Revision as of 09:49, 14 June 2019
				
Line 56:
Line 56:
    
  <section begin=bugfixes/>   <section begin=bugfixes/>
  + * Bruker DC: Support for handling newer versions of the NOE data file.  This fixes bug #15 (https://sourceforge.net/p/nmr-relax/tickets/15/), the failure to read newer versions of the Bruker DC NOE data files.  This was simply a parsing issue as the NOE column is now "NOE [ ]" whereas previous DC versions used the text "NOE" or "NOE [none]".
  <section end=bugfixes/>   <section end=bugfixes/>
    



Bugman: /* Changes */ Copied the changes list from the CHANGES file.
2019-06-14T09:48:51Z
Changes:  Copied the changes list from the CHANGES file.

				
				
				
				
				
				← Older revision
				Revision as of 09:48, 14 June 2019
				
Line 39:
Line 39:
    
  <section begin=changes/>   <section begin=changes/>
  +  FSF Copyright Validation configuration: Blacklisted the PDF user manual.  This allows the checking of relax tags to pass.
  + * Release checklist document: Describe the relax fork of latex2html.
  + * API manual: No longer raise errors when parsing the pystarlib docstrings.
  + * Release checklist document: Minor improvements to match the practical aspects of the release.
  + * User manual: Proper abbreviation of the "Quarterly Reviews of Biophysics" journal name.
  + * Test suite: New system test to catch the failure of reading newer Bruker DC NOE data files.  The system test is Bruker.test_bug_15_NOE_read_fail and it catches bug #15 (https://sourceforge.net/p/nmr-relax/tickets/15/).  The test uses truncated data from Stefano Ciurli as attached to the bug report.
  + * Bruker DC: Silence the warnings about spin names already existing.  The user does not need to see such warnings.
  + * Travis CI config: Explicitly set 'trusty' as the distribution name for the default images.  In the support request titled "Failure of GUI testing via xvfb" (https://support.travis-ci.com/hc/en-us/requests/7654), the Travis CI support staff suggested that we explicitly set 'dist: trusty'.
  + * Bruker DC: A different way to silence the warnings about spin names already existing.  The previous attempt at setting the force flag to True was causing failures in a number of system tests.  Therefore a new flag 'warn_flag' has been added to pipe_control.mol_res_spin.name_spin() to allow warnings to be explicitly silenced.
  + * Travis CI config: Use Xenial for running all tests on Linux and Python 2.7.  This is from the support request titled "Failure of GUI testing via xvfb" (https://support.travis-ci.com/hc/en-us/requests/7654).
  + * Travis CI config: Manual support for old SciPy versions on Python 2.7.  SciPy 1.3.0 now requires Python >= 3.5.  Therefore the OLD_MATPLOTLIB variable has been renamed to OLD_PY2_PACKAGES and, when set, is now used to install old matplotlib and scipy versions when using Python 2.7.
  + * Travis CI config: Deactivate the Mac OS X updates to avoid timeouts.  The 'brew update' and 'brew upgrade python3' take up half of the build time for the Mac OS X target.  This large amount of time sometimes causes this build to hit the Travis CI time limits.
  <section end=changes/>   <section end=changes/>

@@ Line 4: / Line 4: @@
 | version  = 4.1.3
 | prev     = 4.1.2
 | keywords = Bruker DC
 | type     = Minor bugfix

@@ Line 65: / Line 65: @@
 * [http://wiki.nmr-relax.com/Relax_4.1.3 Official release notes on the relax wiki].
-* [https://sourceforge.net/p/nmr-relax/mailman/message/36650583/ Mailing list message].
+* [https://sourceforge.net/p/nmr-relax/mailman/message/36694197/ Mailing list message].
 * [https://www.mail-archive.com/nmr-relax-announce@lists.sourceforge.net/msg00004.html The Mail Archive].

← Older revision		Revision as of 09:49, 14 June 2019
Line 56:		Line 56:

	<section begin=bugfixes/>		<section begin=bugfixes/>
		+	* Bruker DC: Support for handling newer versions of the NOE data file. This fixes bug #15 (https://sourceforge.net/p/nmr-relax/tickets/15/), the failure to read newer versions of the Bruker DC NOE data files. This was simply a parsing issue as the NOE column is now "NOE [ ]" whereas previous DC versions used the text "NOE" or "NOE [none]".
	<section end=bugfixes/>		<section end=bugfixes/>

← Older revision		Revision as of 09:48, 14 June 2019
Line 39:		Line 39:

	<section begin=changes/>		<section begin=changes/>
		+	FSF Copyright Validation configuration: Blacklisted the PDF user manual. This allows the checking of relax tags to pass.
		+	* Release checklist document: Describe the relax fork of latex2html.
		+	* API manual: No longer raise errors when parsing the pystarlib docstrings.
		+	* Release checklist document: Minor improvements to match the practical aspects of the release.
		+	* User manual: Proper abbreviation of the "Quarterly Reviews of Biophysics" journal name.
		+	* Test suite: New system test to catch the failure of reading newer Bruker DC NOE data files. The system test is Bruker.test_bug_15_NOE_read_fail and it catches bug #15 (https://sourceforge.net/p/nmr-relax/tickets/15/). The test uses truncated data from Stefano Ciurli as attached to the bug report.
		+	* Bruker DC: Silence the warnings about spin names already existing. The user does not need to see such warnings.
		+	* Travis CI config: Explicitly set 'trusty' as the distribution name for the default images. In the support request titled "Failure of GUI testing via xvfb" (https://support.travis-ci.com/hc/en-us/requests/7654), the Travis CI support staff suggested that we explicitly set 'dist: trusty'.
		+	* Bruker DC: A different way to silence the warnings about spin names already existing. The previous attempt at setting the force flag to True was causing failures in a number of system tests. Therefore a new flag 'warn_flag' has been added to pipe_control.mol_res_spin.name_spin() to allow warnings to be explicitly silenced.
		+	* Travis CI config: Use Xenial for running all tests on Linux and Python 2.7. This is from the support request titled "Failure of GUI testing via xvfb" (https://support.travis-ci.com/hc/en-us/requests/7654).
		+	* Travis CI config: Manual support for old SciPy versions on Python 2.7. SciPy 1.3.0 now requires Python >= 3.5. Therefore the OLD_MATPLOTLIB variable has been renamed to OLD_PY2_PACKAGES and, when set, is now used to install old matplotlib and scipy versions when using Python 2.7.
		+	* Travis CI config: Deactivate the Mac OS X updates to avoid timeouts. The 'brew update' and 'brew upgrade python3' take up half of the build time for the Mac OS X target. This large amount of time sometimes causes this build to hit the Travis CI time limits.
	<section end=changes/>		<section end=changes/>

Relax 4.1.3 - Revision history

Bugman: Forward link to the 5.0.0 release.

Bugman: Corrected the mailing list message link.

Bugman: Conversion of the direct links.

Bugman: Added tags for better formatting.

Bugman: Extensive links to the API documentation.

Bugman: Converted all symbols to use wiki formatting.

Bugman: /* Changes */

Bugman: Converted all of the tracker links to wiki format.

Bugman: /* Bugfixes */ Copied the bugfix list from the CHANGES file.

Bugman: /* Changes */ Copied the changes list from the CHANGES file.

Bugman: Added `tags for better formatting.`