Difference between revisions of "User:Troels Emtekær Linnet"

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At November 2015, google give free trial of '''300$'''. https://cloud.google.com/free-trial/
 
At November 2015, google give free trial of '''300$'''. https://cloud.google.com/free-trial/
 +
 +
Note, there are some limitations: https://cloud.google.com/free-trial/#/faq
  
 
== Start free trial ==
 
== Start free trial ==
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You need to sign up with a credit card. To prevent mis-abuse from robots and hackers.
 
You need to sign up with a credit card. To prevent mis-abuse from robots and hackers.
  
* Then go to: https://console.developers.google.com/
+
'''Then go to: https://console.developers.google.com'''
* You should already have a project called '''My First Project'''. You can '''create a new project''' in top right corner of the browser under the dropdown of '''My First Project'''.
+
* You should already have a project called '''My First Project'''.  
 +
* '''Create a new project''' in top right corner of the browser under the dropdown of '''My First Project'''.
 
* Call the new project '''relax''' with '''App Engine location''' at '''europe-west'''
 
* Call the new project '''relax''' with '''App Engine location''' at '''europe-west'''
* Click then at '''Try Compute Engine'''
+
* Click then at '''Try Compute Engine''' or go to https://console.developers.google.com/compute
 +
 
 +
'''Now we need to create a Virtual Machine instance'''
 +
* Click '''Create instance'''
 +
* '''Name:''' relax
 +
* '''Zone:''' Don't change this. As of Nov 2015, it seems that if you change this, you cannot select 32 vCPU's
 +
* '''Machine type:''' From the very bottom, create '''16 vCPUs'''. 32 cores need an upgrade to you account.
 +
* '''Boot disk:''' 10 GB of Ubuntu 14.04 LTS
 +
* Let the rest be default and click '''Create'''.

Revision as of 12:50, 28 November 2015

Troels Emtekær Linnet PhD student Copenhagen University SBiNLab

Tests

80px 80px

<include src="https://raw.github.com/Pymol-Scripts/Pymol-script-repo/master/cyspka.py" />

Test2

<include src="http://www.ietf.org/rfc/rfc1945" />

Test DPL imagecontainer=Screenshots

[[%PAGE%|thumb|185px|A random relax screenshot. See Screenshots.]]


SeriesTab

ls -v -d -1 */*.ft2 > allplanes.list
cd analysis_FT/int_corr_ft_method_all_awk/coMDD
seriesTab -in peaks.dat
seriesTab -in ../../peaks.dat -out allplanes_coMDD_ser.ser -list allplanes_coMDD.list

Test randomimagebycategor


Test

from math import pi
from lib import nmr
from lib.physical_constants import return_gyromagnetic_ratio


id = 'test'
H_frq = 900.0e6
B0_tesla =  H_frq / return_gyromagnetic_ratio(nucleus='1H') * 2.0 * pi
print "B0 in Tesla:", B0_tesla
isotope = '15N'

yOBS_N15_rad_s = return_gyromagnetic_ratio(nucleus=isotope) * B0_tesla
yOBS_N15_ppm = nmr.frequency_to_ppm_from_rad(frq=yOBS_N15_rad_s, B0=H_frq, isotope=isotope)

print yOBS_N15_ppm

# Convert hz
offset_hz = 2100.
offset_ppm = nmr.frequency_to_ppm(frq=offset_hz, B0=H_frq, isotope=isotope)
print offset_ppm


#yOBS_rad_s = return_gyromagnetic_ratio(nucleus=isotope) * B0_tesla
#print yOBS_rad_s
#yOBS_ppm = nmr.frequency_to_ppm_from_rad(frq=yOBS_rad_s, B0=H_frq, isotope=isotope)
#print yOBS_ppm


# Center carriage In ppm
yCAR_ppm = 118.078

Google Cloud Computing

This follows the same idea as from Run relax at cloud.sagemath.com

pricing

For this example of Google Cloud Computing, we wan't to have access to as many computer cores as possible

For calculation of:

  • 1 server
  • using Free: Debian, CentOS, ...
  • with a regular VM Class
  • Instance type of (HIGH CPU) n1-highcpu-32 (vCPUs: 32, RAM: 28.80 GB)
  • 0 SSD
  • Datacenter location Europe
  • Average days per month each server is running: 1 days, per month.

The monthly price was of November 2015, $32.26.

At November 2015, google give free trial of 300$. https://cloud.google.com/free-trial/

Note, there are some limitations: https://cloud.google.com/free-trial/#/faq

Start free trial

Please first see this video:

Go to: https://cloud.google.com/free-trial/ and click Start your free trial.

You need to sign up with a credit card. To prevent mis-abuse from robots and hackers.

Then go to: https://console.developers.google.com

  • You should already have a project called My First Project.
  • Create a new project in top right corner of the browser under the dropdown of My First Project.
  • Call the new project relax with App Engine location at europe-west
  • Click then at Try Compute Engine or go to https://console.developers.google.com/compute

Now we need to create a Virtual Machine instance

  • Click Create instance
  • Name: relax
  • Zone: Don't change this. As of Nov 2015, it seems that if you change this, you cannot select 32 vCPU's
  • Machine type: From the very bottom, create 16 vCPUs. 32 cores need an upgrade to you account.
  • Boot disk: 10 GB of Ubuntu 14.04 LTS
  • Let the rest be default and click Create.