Difference between revisions of "User:Troels Emtekær Linnet"
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| + | Troels Emtekær Linnet | ||
| + | PhD student | ||
| + | Copenhagen University | ||
| + | SBiNLab | ||
| + | |||
| + | == Tests == | ||
[[File:Example.jpg|80px|link=http://www.wikipedia.org]] | [[File:Example.jpg|80px|link=http://www.wikipedia.org]] | ||
[[File:Example.jpg|80px|link=MediaWiki]] | [[File:Example.jpg|80px|link=MediaWiki]] | ||
| Line 4: | Line 10: | ||
<div class="imagelink_screenshots_small">[[start.png| ]]</div> | <div class="imagelink_screenshots_small">[[start.png| ]]</div> | ||
| − | |||
<include src="https://raw.github.com/Pymol-Scripts/Pymol-script-repo/master/cyspka.py" /> | <include src="https://raw.github.com/Pymol-Scripts/Pymol-script-repo/master/cyspka.py" /> | ||
| Line 11: | Line 16: | ||
<include src="http://www.ietf.org/rfc/rfc1945" /> | <include src="http://www.ietf.org/rfc/rfc1945" /> | ||
| − | == Test | + | == Test DPL imagecontainer=Screenshots == |
<DPL> | <DPL> | ||
imagecontainer=Screenshots | imagecontainer=Screenshots | ||
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seriesTab -in peaks.dat | seriesTab -in peaks.dat | ||
seriesTab -in ../../peaks.dat -out allplanes_coMDD_ser.ser -list allplanes_coMDD.list | seriesTab -in ../../peaks.dat -out allplanes_coMDD_ser.ser -list allplanes_coMDD.list | ||
| + | |||
| + | == Test randomimagebycategor == | ||
| + | <randomimagebycategory width="200" categories="Screenshots"/> | ||
| + | |||
| + | |||
| + | == Test == | ||
| + | <source lang="python"> | ||
| + | from math import pi | ||
| + | from lib import nmr | ||
| + | from lib.physical_constants import return_gyromagnetic_ratio | ||
| + | |||
| + | |||
| + | id = 'test' | ||
| + | H_frq = 900.0e6 | ||
| + | B0_tesla = H_frq / return_gyromagnetic_ratio(nucleus='1H') * 2.0 * pi | ||
| + | print "B0 in Tesla:", B0_tesla | ||
| + | isotope = '15N' | ||
| + | |||
| + | yOBS_N15_rad_s = return_gyromagnetic_ratio(nucleus=isotope) * B0_tesla | ||
| + | yOBS_N15_ppm = nmr.frequency_to_ppm_from_rad(frq=yOBS_N15_rad_s, B0=H_frq, isotope=isotope) | ||
| + | |||
| + | print yOBS_N15_ppm | ||
| + | |||
| + | # Convert hz | ||
| + | offset_hz = 2100. | ||
| + | offset_ppm = nmr.frequency_to_ppm(frq=offset_hz, B0=H_frq, isotope=isotope) | ||
| + | print offset_ppm | ||
| + | |||
| + | |||
| + | #yOBS_rad_s = return_gyromagnetic_ratio(nucleus=isotope) * B0_tesla | ||
| + | #print yOBS_rad_s | ||
| + | #yOBS_ppm = nmr.frequency_to_ppm_from_rad(frq=yOBS_rad_s, B0=H_frq, isotope=isotope) | ||
| + | #print yOBS_ppm | ||
| + | |||
| + | |||
| + | # Center carriage In ppm | ||
| + | yCAR_ppm = 118.078 | ||
| + | </source> | ||
Latest revision as of 15:59, 28 November 2015
Troels Emtekær Linnet PhD student Copenhagen University SBiNLab
Contents
Tests
<include src="https://raw.github.com/Pymol-Scripts/Pymol-script-repo/master/cyspka.py" />
Test2
<include src="http://www.ietf.org/rfc/rfc1945" />
Test DPL imagecontainer=Screenshots
[[%PAGE%|thumb|185px|A random relax screenshot. See Screenshots.]]
SeriesTab
ls -v -d -1 */*.ft2 > allplanes.list
cd analysis_FT/int_corr_ft_method_all_awk/coMDD seriesTab -in peaks.dat seriesTab -in ../../peaks.dat -out allplanes_coMDD_ser.ser -list allplanes_coMDD.list
Test randomimagebycategor
Test
from math import pi
from lib import nmr
from lib.physical_constants import return_gyromagnetic_ratio
id = 'test'
H_frq = 900.0e6
B0_tesla = H_frq / return_gyromagnetic_ratio(nucleus='1H') * 2.0 * pi
print "B0 in Tesla:", B0_tesla
isotope = '15N'
yOBS_N15_rad_s = return_gyromagnetic_ratio(nucleus=isotope) * B0_tesla
yOBS_N15_ppm = nmr.frequency_to_ppm_from_rad(frq=yOBS_N15_rad_s, B0=H_frq, isotope=isotope)
print yOBS_N15_ppm
# Convert hz
offset_hz = 2100.
offset_ppm = nmr.frequency_to_ppm(frq=offset_hz, B0=H_frq, isotope=isotope)
print offset_ppm
#yOBS_rad_s = return_gyromagnetic_ratio(nucleus=isotope) * B0_tesla
#print yOBS_rad_s
#yOBS_ppm = nmr.frequency_to_ppm_from_rad(frq=yOBS_rad_s, B0=H_frq, isotope=isotope)
#print yOBS_ppm
# Center carriage In ppm
yCAR_ppm = 118.078
