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<onlyinclude>This release solves many major bugs in the final stages of model-free analysis, especially when using the 'full_analysis.py' script [d'Auvergne and Gooley, 2008]. This version also marks the return of the NOE analysis. If you are using relax version 1.3.1, it is recommended that you upgrade to 1.3.2. Bugs which have been resolved include: problems reading PDB files; failure of the [http://www.nmr-relax.com/manual/value_set.html value.set], [http://www.nmr-relax.com/manual/fix.html fix] and [http://www.nmr-relax.com/manual/value_write.html value.write] user functions; non-functional [http://www.nmr-relax.com/manual/eliminate.html model elimination]; model selection issues in certain situations; and various Monte Carlo simulation issues.</onlyinclude>== Description ==
= References =
= See * [http://www.nmr-relax.com/api/1.3/ The relax 1.3 API documentation]{{:relax release see also =}}[[Category:Release_NotesModel-free analysis]]
{{lowercase title}}
{{infobox relax release| version = Description 1.3.2| prev =1.3.1| next = 1.3.3| keywords = Model-free analysis, NOE analysis| type = Major bugfix| date = 8 October 2008| manual = yes}}
<section begin= Download description/>This release solves many major bugs in the final stages of model-free analysis, especially when using the 'full_analysis.py' script [d'Auvergne and Gooley, 2007][d'Auvergne and Gooley, 2008b]. This version also marks the return of the NOE analysis. If you are using [[relax 1.3.1|relax version 1.3.1]], it is recommended that you upgrade to [[relax 1.3.2|1.3.2]]. Bugs which have been resolved include: problems reading PDB files; failure of the [http://www.nmr-relax.com/manual/value_set.html value.set], [http://www.nmr-relax.com/manual/fix.html fix] and [http://www.nmr-relax.com/manual/value_write.html value.write] user functions; non-functional [http://www.nmr-relax.com/manual/eliminate.html model elimination]; model selection issues in certain situations; and various Monte Carlo simulation issues.<section end=description/>
== Download ==
<section begin=download/>
The new relax versions can be downloaded from http://www.nmr-relax.com/download.html. If binary distributions are not yet available for your platform and you manage to compile the binary modules, please consider contributing these to the relax project (described in section 3.6 of the relax manual, http://www.nmr-relax.com/manual/relax_distribution_archives.html).
<section end=download/>
== CHANGES file ==
<section begin= CHANGES file =metadata/>Version 1.3.2<br/>(8 October 2008, from /1.3)<br/>
http://svn.gna.org/svn/relax/tags/1.3.2
<section end=metadata/>
=== Features ===
<section begin=features/>
* The NOE analysis has been converted to the new design and is fully functional again.
<section end=features/>
=== Changes ===
<section begin=changes/>
* Internal abstractions to the relax data store by using the generic_fns.pipes API.
* Added more literature references to the 'full_analysis.py' script.
* Eliminated Monte Carlo simulations are better identified during user function execution.
<section end=changes/>
=== Bugfixes ===
<section begin=bugfixes/>
* The generation of the cone geometric object for the N-state model is fixed.
* Fixes for the relax_curve_diff.py and latex_mf_table.py sample scripts (identified by the relax data store abstraction).
* Fixed the reading of relax 1.2 model-free results files (identified by the relax data store abstraction).
* Various PDB file loading issues fixed.
* [http://www.nmr-relax.com/manual/value_set.html value.set() ] no longer fails when the parameter being set already exists ({{gna bug #link|12406}}).* Fix for the bug whereby model elimination does nothing for model-free models. This fix may solve other model-free related issues ({{gna bug #link|12407}}).* Model elimination no longer fails when no diffusion tensor is loaded ({{gna bug #link|12408}}).* The error when loading the PDB file through the reading of the results file in the 'final' stage of the 'full_analysis.py' sample script is fixed ({{gna bug # link|12409}}).
* Model elimination is fixed in the 'full_analysis.py' script.
* The [http://www.nmr-relax.com/manual/fix.html fix() user function ] works again when the element argument is set to 'all'.
* Fix for the duplication of sequence data during model selection.
* Monte Carlo simulations were failing due to a missing sequence error ({{gna bug #link|12410}}).* The model elimination error "AttributeError: 'SpinContainer' object has no attribute 'params'." has been fixed ({{gna bug #link|12411}}).* A missing global chi-squared value was causing failure of global model selection ({{gna bug #link|12412}}).* Monte Carlo simulation elimination was removing the simulation not from the affected spin but from all spins ({{gna bug #link|12416}}).* Fix for the failure of the [http://www.nmr-relax.com/manual/value_write.html value.write() user function ] in all analysis types ({{gna bug #link|12418}}).<section end=bugfixes/> == Links == <section begin=links/>For reference, the following links are also part of the announcement for this release:* [http://wiki.nmr-relax.com/Relax_1.3.2 Official release notes]* {{gna link|url=gna.org/forum/forum.php?forum_id=1973|text=Gna! news item}}* [http://article.gmane.org/gmane.science.nmr.relax.announce/22 Gmane]* [http://www.mail-archive.com/relax-announce%40gna.org/msg00014.html Mail archive]* [https://mail.gna.org/public/relax-announce/2008-10/msg00000.html Local archives]* [http://marc.info/?l=relax-announce&m=135070664625005&w=2 MARC]<section end=links/>
== Announcements ==
{{:relax release announcements}}
== References == * [*d'Auvergne and Gooley, 20082007] {{#lst:Citations|dAuvergneGooley07}}* [*d'Auvergne, E. J. and Gooley, P. R. (2008). Optimisation of NMR dynamic models II. A new methodology for the dual optimisation of the model-free parameters and the Brownian rotational diffusion tensor. ''J. Biomol. NMR'', '''40'''(2), 121-133. (DOI2008b] {{#lst: [http://dx.doi.org/10.1007/s10858-007-9213-3 10.1007/s10858-007-9213-3]).Citations|dAuvergneGooley08b}}
<HarvardReferences />
== See also ==