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Relax 3.1.5

819 bytes added, 08:49, 16 October 2020
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{{infobox relax release| version = Description 3.1.5| prev =3.1.4| next = 3.1.6| keywords = NOE analysis| type = Major bugfix| date = 4 February 2014| manual = yes}}
<onlyinclude>This is a major bugfix release which fixes the complete failure of the NOE analysis for most users, a bug introduced in the [[relax 3.1.4|last relax release]] (https://gna.org/forum/forum.php?forum_id=2433). All users of [[relax 3.1.4]] should upgrade to this version.</onlyinclude>= Description ==
<section begin=description/>
This is a major bugfix release which fixes the complete failure of the NOE analysis for most users, a bug introduced in the [[relax 3.1.4|last relax release]]. All users of [[relax 3.1.4]] should upgrade to this version.
<section end=description/>
== Download ==
<section begin=download/>
The new relax versions can be downloaded from http://www.nmr-relax.com/download.html. If binary distributions are not yet available for your platform and you manage to compile the binary modules, please consider contributing these to the relax project (described in section 3.6 of the relax manual, http://www.nmr-relax.com/manual/relax_distribution_archives.html).
<section end=download/>
== CHANGES file ==
<section begin= CHANGES file =metadata/>Version 3.1.5<br/>(4 February 2014, from /trunk)<br/>
http://svn.gna.org/svn/relax/tags/3.1.5
<section end=metadata/>
=== Features ===
<section begin=features/>N/A<section end= Features ==features/>
N/A=== Changes ===
<section begin=changes/>
* Updated the [http://www.nmr-relax.com/manual/interatom_unit_vectors.html interatom.unit_vectors user function description] to add the text '3D structure'. This is in response to the http://thread.gmane.org/gmane.science.nmr.relax.user/1547 relax-users mailing list message and the change is to clarify the usage of the user function.
* Created the Noe.test_bug_21591_noe_calculation_fail system test. This is to catch [https://gna.org/bugs/?21591 bug #21591] submitted by {{gna link|url=gna.org/users/mab|text=Martin Ballaschk}}. This is the complete failure of the NOE analysis. The peak lists attached to the bug report have been included in the test suite to create the system test.
* Improvements for the steady-state NOE analysis overfit_deselect() method. The spin deselection which occurs at the start of the [http://www.nmr-relax.com/manual/calc.html calc user function] call, used to calculate the NOE, is now clearer. Each deselection condition is now explained in detail and the text is now far more informative. In addition, the special condition of all spins being deselected is now caught. If this happens, a RelaxError is raised to prevent the user from going forwards. This should remove confusion as to why the output file is empty.
<section end=changes/>
== Changes = Bugfixes ===
* Updated the interatom.unit_vectors user function description to add the text '3D structure'. This is in response to the http:/<section begin=bugfixes/thread.gmane.org/gmane.science.nmr.relax.user/1547 relax-users mailing list message and the change is to clarify the usage of the user function.>* Created the Noe.test_bug_21591_noe_calculation_fail system test. This is to catch Fix for [https://gna.org/bugs/?21591 bug #21591, the complete failure of the NOE analysis] submitted . This bug was reported by [https://{{gna link|url=gna.org/users/mab |text=Martin Ballaschk]}}. This is The issue was introduced in the complete failure of the NOE analysisfix for [https://gna. The peak lists attached to the org/bugs/?21562 bug report have been included in the test suite to create the system test#21562].* Improvements for The problem is that the steady-state NOE analysis overfit_deselect() method. The spin deselection which occurs at the start of the calc user function call, used to calculate the NOE, is now clearer. Each deselection condition is now explained in detail and the text is now far more informative. In addition, the special condition of was deselecting all spins being deselected is now caught. If this happens, a RelaxError is raised to prevent the user from going forwards. This should remove confusion as to why the output file is emptywith two data points or less rather than one or less.<section end=bugfixes/>
== Links ==
<section begin== Bugfixes ==links/>For reference, the announcement for this release can also be found at following links:
* Fix for [httpshttp://wiki.nmr-relax.com/Relax_3.1.5 Official release notes on the relax wiki].* {{gna link|url=gna.org/bugsforum/forum.php?21591 bug #21591, the complete failure of the NOE analysis]forum_id=2434|text=Gna! news item}}. This bug was reported by * [httpshttp://gnaarticle.gmane.org/usersgmane.science.nmr.relax.announce/mab Martin Ballaschk51 Gmane mailing list archive]. * [http://www.mail-archive.com/relax-announce%40gna.org/msg00045.html The issue was introduced in the fix for Mail Archive].* [https://mail.gna.org/bugspublic/?21562 bug #21562relax-announce/2014-02/msg00001.html Local archives]. The problem is that the overfit_deselect* [http://marc.info/?l=relax-announce&m=139155160119871&w=2 Mailing list ARChives (MARC) method was deselecting all spins with two data points or less rather than one or less].
{{:Softpedia}}
<section end=links/>
== Announcements ==
{{:relax release announcements}}
= Links For reference, the following links are See also part of the announcement for this release:* [http://wiki.nmr-relax.com/Relax_3.1.5 Official release notes]* [https://gna.org/forum/forum.php?forum_id=2434 Gna! news item]* [http://article.gmane.org/gmane.science.nmr.relax.announce/51 Gmane]* [http://www.mail-archive.com/relax-announce%40gna.org/msg00045.html Mail Archive]* [https://mail.gna.org/public/relax-announce/2014-02/msg00001.html Local archives]* [http://marc.info/?l=relax-announce&m=139155160119871&w=2 MARC]  = See also =
* [http://www.nmr-relax.com/api/3.1/ The relax 3.1 API documentation]{{:relax release see also}}[[Category:Release_NotesSteady-state NOE analysis]]
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