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Relax release descriptions

4,119 bytes removed, 11:30, 29 September 2023
Added the 4.1 and 5.0 versions.
This is a collection of all of the descriptions for each released relax version.
 
= Version 5 of relax =
 
== relax 5.0 series ==
 
=== [[relax 5.0.0]] ===
{{#lst:relax 5.0.0|description}}
 
 
= Version 4 of relax =
 
== relax 4.1 series ==
 
=== [[relax 4.1.3]] ===
{{#lst:relax 4.1.3|description}}
 
=== [[relax 4.1.2]] ===
{{#lst:relax 4.1.2|description}}
 
=== [[relax 4.1.1]] ===
{{#lst:relax 4.1.1|description}}
 
=== [[relax 4.1.0]] ===
{{#lst:relax 4.1.0|description}}
 
 
== relax 4.0 series ==
 
=== [[relax 4.0.3]] ===
{{#lst:relax 4.0.3|description}}
 
=== [[relax 4.0.2]] ===
{{#lst:relax 4.0.2|description}}
 
=== [[relax 4.0.1]] ===
{{#lst:relax 4.0.1|description}}
 
=== [[relax 4.0.0]] ===
{{#lst:relax 4.0.0|description}}
 
 
= Version 3 of relax =
== relax 3.3 series ==
 
=== [[relax 3.3.9]] ===
{{#lst:relax 3.3.9|description}}
 
=== [[relax 3.3.8]] ===
{{#lst:relax 3.3.8|description}}
 
=== [[relax 3.3.7]] ===
{{#lst:relax 3.3.7|description}}
 
=== [[relax 3.3.6]] ===
{{#lst:relax 3.3.6|description}}
 
=== [[relax 3.3.5]] ===
{{#lst:relax 3.3.5|description}}
 
=== [[relax 3.3.4]] ===
{{#lst:relax 3.3.4|description}}
 
=== [[relax 3.3.3]] ===
{{#lst:relax 3.3.3|description}}
 
=== [[relax 3.3.2]] ===
{{#lst:relax 3.3.2|description}}
 
=== [[relax 3.3.1]] ===
{{#lst:relax 3.3.1|description}}
=== [[relax 3.3.0]] ===
=== [[relax 1.0.2]] ===
This release corresponds to many changes to the Brownian rotational diffusion tensor. It includes the shift to the geometric parameters: <math>D_{iso} = \frac{#lst:relax 1}{3} \left( D_x + D_y + D_z \right), \\D_a = D_z - \frac{1}{.0.2|description} \left( D_x + D_y \right) , \\D_r = D_y - \frac{D_x}{2D_a} .</math> Numerous bugs in the old correlation time, weights, and direction cosine code have been fixed. A few of these bugs had been fixed previously but those fixes were somehow lost. Two major problems in the calculation of the Hessian of the ellipsoid direction cosines have been fixed and the ellipsoid diffusion tensor now minimises orders of magnitude faster.
=== [[relax 1.0.1]] ===
= References =
* [*Baldwin 2014] A. Baldwin (2014). An exact solution for R2,eff in CPMG experiments in the case of two site chemical exchange. ''J. Magn. Reson.'', '''244''', 114-124. (DOI{{: [http://dx.doi.org/10.1016/j.jmr.2014.02.023 10.1016/j.jmr.2014.02.023]).* [*Bieri et al, 2011] Bieri, M., d'Auvergne, E., and Gooley, P. (2011). relaxGUI: a new software for fast and simple NMR relaxation data analysis and calculation of ps-ns and μs motion of proteins. ''J. Biomol. NMR'', '''50''', 147-155. (DOI: [http://dx.doi.org/10.1007/s10858-011-9509-1 10.1007/s10858-011-9509-1]).* [*Carver and Richards 1972] Carver, J. P. and Richards, R. E. (1972). General 2-site solution for chemical exchange produced dependence of T2 upon Carr-Purcell pulse separation. ''J. Magn. Reson.'', '''6'''(1), 89-105. (DOI [http://dx.doi.org/10.1016/0022-2364(72)90090-X 10.1016/0022-2364(72)90090-X]).* [*d'Auvergne and Gooley, 2007] d'Auvergne, E. J. and Gooley, P. R. (2007). Set theory formulation of the model-free problem and the diffusion seeded model-free paradigm. ''Mol. BioSyst.'', '''3'''(7), 483–494. (DOI: [http://dx.doi.org/10.1039/b702202f 10.1039/b702202f]).* [*d'Auvergne and Gooley, 2008] d'Auvergne, E. J. and Gooley, P. R. (2008). Optimisation of NMR dynamic models II. A new methodology for the dual optimisation of the model-free parameters and the Brownian rotational diffusion tensor. ''J. Biomol. NMR'', '''40'''(2), 121-133. (DOI: [http://dx.doi.org/10.1007/s10858-007-9213-3 10.1007/s10858-007-9213-3]).* [*Davis et al., 1994] Davis, D. G., Perlman, M. E., and London, R. E. (1994). Direct measurements of the dissociation-rate constant for inhibitor-enzyme complexes via the T1rho and T2 (CPMG) methods. ''J. Magn. Reson.'', '''104'''(3), 266-275. (DOI [http://dx.doi.org/10.1006/jmrb.1994.1084 10.1006/jmrb.1994.1084]).* [*Fushman et al., 1998] Fushman, D., Tjandra, N., and Cowburn, D. (1998). Direct measurement of <sup>15</sup>N chemical shift anisotropy in solution. ''J. Am. Chem. Soc.'', '''120'''(42), 10947-10952. (DOI: [http://dx.doi.org/10.1021/ja981686m 10.1021/ja981686m]).* [*Ishima and Torchia 1999] Ishima, R. and Torchia, D. A. (2005). Error estimation and global fitting in transverse-relaxation dispersion experiments to determine chemical-exchange parameters. ''J. Biomol. NMR'', '''32'''(1), 41-54. (DOI [http://dx.doi.org/10.1007/s10858-005-3593-z 10.1007/s10858-005-3593-z]).* [*Luz and Meiboom 1963] Luz, Z. and Meiboom, S. (1963). Nuclear magnetic resonance study of protolysis of trimethylammonium ion in aqueous solution - order of reaction with respect to solvent. ''J. Chem. Phys.'', '''39'''(2), 366-370. (DOI [http://dx.doi.org/10.1063/1.1734254 10.1063/1.1734254]).* [*Meiboom 1961] Meiboom, S. (1961). Nuclear magnetic resonance study of proton transfer in water. ''J. Chem. Phys.'', '''34'''(2), 375-388. (DOI [http://dx.doi.org/10.1063/1.1700960 10.1063/1.1700960]).* [*Miloushev and Palmer 2005] Miloushev, V. Z. and Palmer, 3rd, A. G. (2005). R(1rho) relaxation for two-site chemical exchange: general approximations and some exact solutions. ''J. Magn. Reson.'', '''177'''(2), 221-227. (DOI [http://dx.doi.org/10.1016/j.jmr.2005.07.023 10.1016/j.jmr.2005.07.023]).* [*Morin and Gagné, 2009] Morin, S. and Gagné, S. (2009). Simple tests for the validation of multiple field spin relaxation data. ''J. Biomol. NMR'', '''45''', 361-372. (DOI: [http://dx.doi.org/10.1007/s10858-009-9381-4 10.1007/s10858-009-9381-4]).* [*Morin et al., 2014] Morin, S., Linnet, T. E., Lescanne, M., Schanda, P., Thompson, G. S., Tollinger, M., Teilum, K., Gagne, S., Marion, D., Griesinger, C., Blackledge, M., and d’Auvergne, E. J. (2014). relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data. ''Bioinformatics'', '''30'''(15), 2219-2220. (DOI [http://dx.doi.org/10.1093/bioinformatics/btu166 10.1093/bioinformatics/btu166]).* [*Tollinger et al., 2001] Tollinger, M., Skrynnikov, N. R., Mulder, F. A. A., Forman-Kay, J. D., and Kay, L. E. (2001). Slow dynamics in folded and unfolded states of an sh3 domain. ''J. Am. Chem. Soc.'', '''123'''(46), 11341-11352. (DOI [http://dx.doi.org/10.1021/ja011300z 10.1021/ja011300z]).* [*Trott and Palmer 2002] Trott, O. and Palmer, 3rd, A. G. (2002). R1rho relaxation outside of the fast-exchange limit. ''J. Magn. Reson.'', '''154'''(1), 157-160. (DOI [http://dx.doi.org/10.1006/jmre.2001.2466 10.1006releases/jmre.2001.2466]).references}}* [*Trott et al., 2003] Trott, O., Abergel, D., and Palmer, A. (2003). An average-magnetization analysis of R-1 rho relaxation outside of the fast exchange. ''Mol. Phys.'', '''101'''(6), 753-763. (DOI [http://dx.doi.org/10.1080/0026897021000054826 10.1080/0026897021000054826]).<HarvardReferences />
= See also =
{{:relax release see also}}
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