Difference between revisions of "Grep log file"
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| + | The following describes how to convert a relax log file into a relax script. | ||
| + | |||
== Grep the log file for commands == | == Grep the log file for commands == | ||
First we find which commands relax has performed, and separate into the different fitting models.<br> | First we find which commands relax has performed, and separate into the different fitting models.<br> | ||
| − | We also just make some line space and important points | + | We also just make some line space and important points. |
| − | + | ||
| − | + | Then we replace instances of '''relax> ''' with empty, and comment out the model line. | |
| − | + | ||
| − | + | Put this into a file: '''relax_log_to_py.sh''' | |
| − | |||
| − | Then we replace instances of '''relax> ''' with empty, and comment out the model line | ||
<source lang="bash"> | <source lang="bash"> | ||
| + | #!/bin/tcsh -f | ||
| + | |||
| + | set LOGS=`ls -v -d -1 *.log` | ||
| + | foreach LOG ( ${LOGS} ) | ||
| + | set BNAME=`basename $LOG .log` | ||
| + | set OUT="grep_${BNAME}.py" | ||
| + | egrep -wi --color 'relax>| model -' $LOG > $OUT ; | ||
sed -i "s/relax> //" $OUT ; | sed -i "s/relax> //" $OUT ; | ||
sed -i 's/^- /\n#- /' $OUT ; | sed -i 's/^- /\n#- /' $OUT ; | ||
sed -i 's/^minimise(/\nminimise(/' $OUT ; | sed -i 's/^minimise(/\nminimise(/' $OUT ; | ||
| + | sed -i 's/^script(/\n#script(/' $OUT ; | ||
sed -i 's/^results.write(/\nresults.write(/' $OUT ; | sed -i 's/^results.write(/\nresults.write(/' $OUT ; | ||
sed -i 's/^model_selection(/\nmodel_selection(/' $OUT ; | sed -i 's/^model_selection(/\nmodel_selection(/' $OUT ; | ||
sed -i '0,/spectrum.replicated(/s//\nspectrum.replicated(/' $OUT ; | sed -i '0,/spectrum.replicated(/s//\nspectrum.replicated(/' $OUT ; | ||
sed -i '0,/spectrum.read_intensities(/s//\nspectrum.read_intensities(/' $OUT ; | sed -i '0,/spectrum.read_intensities(/s//\nspectrum.read_intensities(/' $OUT ; | ||
| + | end | ||
| + | </source> | ||
| + | |||
| + | Make it executable | ||
| + | <source lang="bash"> | ||
| + | chmod +x relax_log_to_py.sh | ||
| + | </source> | ||
| + | |||
| + | End then execute it | ||
| + | <source lang="bash"> | ||
| + | ./relax_log_to_py.sh | ||
| + | # OR | ||
| + | tcsh relax_log_to_py.sh | ||
</source> | </source> | ||
| + | |||
| + | Then look out for files starting with '''grep_'''. | ||
== See also == | == See also == | ||
Latest revision as of 17:47, 22 October 2015
The following describes how to convert a relax log file into a relax script.
Grep the log file for commands
First we find which commands relax has performed, and separate into the different fitting models.
We also just make some line space and important points.
Then we replace instances of relax> with empty, and comment out the model line.
Put this into a file: relax_log_to_py.sh
#!/bin/tcsh -f
set LOGS=`ls -v -d -1 *.log`
foreach LOG ( ${LOGS} )
set BNAME=`basename $LOG .log`
set OUT="grep_${BNAME}.py"
egrep -wi --color 'relax>| model -' $LOG > $OUT ;
sed -i "s/relax> //" $OUT ;
sed -i 's/^- /\n#- /' $OUT ;
sed -i 's/^minimise(/\nminimise(/' $OUT ;
sed -i 's/^script(/\n#script(/' $OUT ;
sed -i 's/^results.write(/\nresults.write(/' $OUT ;
sed -i 's/^model_selection(/\nmodel_selection(/' $OUT ;
sed -i '0,/spectrum.replicated(/s//\nspectrum.replicated(/' $OUT ;
sed -i '0,/spectrum.read_intensities(/s//\nspectrum.read_intensities(/' $OUT ;
end
Make it executable
chmod +x relax_log_to_py.sh
End then execute it
./relax_log_to_py.sh
# OR
tcsh relax_log_to_py.sh
Then look out for files starting with grep_.
