Difference between revisions of "CR72 full"
(Created the 'CR72 full' dispersion model page.) |
(→See also: Added more categories.) |
||
(24 intermediate revisions by 2 users not shown) | |||
Line 1: | Line 1: | ||
− | The full Carver and Richards 1972 2-site relaxation dispersion model for [[SQ CPMG-type data]] for most time scales. | + | The full Carver and Richards 1972 2-site relaxation dispersion model for [[SQ CPMG-type data]] for most time scales. This model is labelled as '''CR72 full''' in [[Relaxation dispersion citation for relax|relax]]. |
+ | |||
+ | == Equation == | ||
+ | [http://www.nmr-relax.com/manual/Dispersion_model_summary.html Please see the summary of the model parameters here.] | ||
+ | |||
+ | * relax manual http://www.nmr-relax.com/manual/full_CR72_2_site_CPMG_model.html | ||
+ | * relaxation dispersion page of the relax website http://www.nmr-relax.com/analyses/relaxation_dispersion.html#CR72_full | ||
+ | |||
+ | <math> | ||
+ | R_{2,\textrm{eff}} = \frac{R_2^A+R_2^B+k_{\textrm{EX}}}{2} - \nu_{\textrm{cpmg}} \cosh^{-1} (D_+\cosh(\eta_+) - D_-\cos(\eta_-)) | ||
+ | </math> | ||
+ | |||
+ | Which have the following definitions | ||
+ | |||
+ | <math> | ||
+ | \alpha_- = R_2^A - R_2^B + k_{\textrm{AB}} - k_{\textrm{BA}} \\ | ||
+ | \zeta = 2 \Delta \omega \, (R_2^A - R_2^B +k_{\textrm{AB}} - k_{\textrm{BA}} ) \\ | ||
+ | \phantom{\zeta} = 2 \Delta \omega \, (R_2^A - R_2^B + p_B k_{\textrm{EX}} - p_A k_{\textrm{EX}} ) \\ | ||
+ | \phantom{\zeta} = 2 \Delta \omega \alpha_- \\ | ||
+ | \Psi = (R_2^A - R_2^B + p_B k_{\textrm{EX}} - p_A k_{\textrm{EX}} )^2 - \Delta \omega^2 + 4 p_A p_B k_{\textrm{ex}}^2 \\ | ||
+ | \phantom{\Psi} = \alpha_-^2 - \Delta \omega^2 + 4 p_A p_B k_{\textrm{ex}}^2 \\ | ||
+ | \eta_+ = \frac{1}{2\sqrt{2} \, \nu_{\textrm{cpmg}}}\sqrt{+\Psi + \sqrt{\Psi^2 + \zeta^2}} \\ | ||
+ | \eta_- = \frac{1}{2\sqrt{2} \, \nu_{\textrm{cpmg}}}\sqrt{-\Psi + \sqrt{\Psi^2 + \zeta^2}} \\ | ||
+ | D_+=\frac{1}{2}\left(1+\frac{\Psi+2\Delta \omega^2}{\sqrt{\Psi^2+\zeta^2}} \right) \\ | ||
+ | D_-=\frac{1}{2}\left(-1+\frac{\Psi+2\Delta \omega^2}{\sqrt{\Psi^2+\zeta^2}} \right) | ||
+ | </math> | ||
+ | |||
+ | <math>k_{\textrm{EX}}</math> is the chemical exchange rate constant, <math>p_A</math> and <math>p_B</math> are the populations of states A and B, and <math>\Delta \omega</math> is the chemical shift difference between the two states in ppm. | ||
+ | |||
+ | == Parameters == | ||
+ | |||
+ | The CR72 full model has the parameters {{{:R2Azero}}, {{:R2Bzero}}, ..., {{:pA}}, {{:Deltaomega}}, {{:kex}}}. | ||
+ | |||
+ | == Reference == | ||
+ | |||
+ | The reference for the CR72 full model is: | ||
+ | |||
+ | * {{#lst:Citations|CarverRichards72}} | ||
+ | |||
+ | == Related models == | ||
+ | |||
+ | The [[CR72]] model is a parametric restriction of this model. | ||
+ | |||
+ | == Links == | ||
+ | |||
+ | The [[Relaxation dispersion citation for relax|implementation of the CR72 full model in relax]] can be seen in the: | ||
+ | * [http://www.nmr-relax.com/manual/The_full_CR72_2_site_CPMG_model.html relax manual], | ||
+ | * [http://www.nmr-relax.com/api/3.1/lib.dispersion.cr72-module.html API documentation], | ||
+ | * [http://www.nmr-relax.com/analyses/relaxation_dispersion.html#CR72_full relaxation dispersion page of the relax website]. | ||
== See also == | == See also == | ||
− | [[Category:Relaxation_dispersion]] | + | [[Category:Models]] |
+ | [[Category:Dispersion models]] | ||
+ | [[Category:Relaxation_dispersion analysis]] |
Latest revision as of 16:44, 6 November 2015
The full Carver and Richards 1972 2-site relaxation dispersion model for SQ CPMG-type data for most time scales. This model is labelled as CR72 full in relax.
Equation
Please see the summary of the model parameters here.
- relax manual http://www.nmr-relax.com/manual/full_CR72_2_site_CPMG_model.html
- relaxation dispersion page of the relax website http://www.nmr-relax.com/analyses/relaxation_dispersion.html#CR72_full
[math] R_{2,\textrm{eff}} = \frac{R_2^A+R_2^B+k_{\textrm{EX}}}{2} - \nu_{\textrm{cpmg}} \cosh^{-1} (D_+\cosh(\eta_+) - D_-\cos(\eta_-)) [/math]
Which have the following definitions
[math] \alpha_- = R_2^A - R_2^B + k_{\textrm{AB}} - k_{\textrm{BA}} \\ \zeta = 2 \Delta \omega \, (R_2^A - R_2^B +k_{\textrm{AB}} - k_{\textrm{BA}} ) \\ \phantom{\zeta} = 2 \Delta \omega \, (R_2^A - R_2^B + p_B k_{\textrm{EX}} - p_A k_{\textrm{EX}} ) \\ \phantom{\zeta} = 2 \Delta \omega \alpha_- \\ \Psi = (R_2^A - R_2^B + p_B k_{\textrm{EX}} - p_A k_{\textrm{EX}} )^2 - \Delta \omega^2 + 4 p_A p_B k_{\textrm{ex}}^2 \\ \phantom{\Psi} = \alpha_-^2 - \Delta \omega^2 + 4 p_A p_B k_{\textrm{ex}}^2 \\ \eta_+ = \frac{1}{2\sqrt{2} \, \nu_{\textrm{cpmg}}}\sqrt{+\Psi + \sqrt{\Psi^2 + \zeta^2}} \\ \eta_- = \frac{1}{2\sqrt{2} \, \nu_{\textrm{cpmg}}}\sqrt{-\Psi + \sqrt{\Psi^2 + \zeta^2}} \\ D_+=\frac{1}{2}\left(1+\frac{\Psi+2\Delta \omega^2}{\sqrt{\Psi^2+\zeta^2}} \right) \\ D_-=\frac{1}{2}\left(-1+\frac{\Psi+2\Delta \omega^2}{\sqrt{\Psi^2+\zeta^2}} \right) [/math]
[math]k_{\textrm{EX}}[/math] is the chemical exchange rate constant, [math]p_A[/math] and [math]p_B[/math] are the populations of states A and B, and [math]\Delta \omega[/math] is the chemical shift difference between the two states in ppm.
Parameters
The CR72 full model has the parameters {R2A0, R2B0, ..., pA, Δω, kex}.
Reference
The reference for the CR72 full model is:
- Carver, J. P. and Richards, R. E. (1972). General 2-site solution for chemical exchange produced dependence of T2 upon Carr-Purcell pulse separation. J. Magn. Reson., 6(1), 89-105. (DOI: 10.1016/0022-2364(72)90090-X)
Related models
The CR72 model is a parametric restriction of this model.
Links
The implementation of the CR72 full model in relax can be seen in the: