Difference between revisions of "Installation mac mavericks os x"

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= Installation =
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__TOC__
  
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== Download a python distribution which include wxPython ==
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== Installation ==
 +
 
 +
=== Download a python distribution which include wxPython ===
 
At the time for this post, (Dec 2013), the installation of wxPython2.9-osx-cocoa-py2.7 made hickups and crashes.<br>
 
At the time for this post, (Dec 2013), the installation of wxPython2.9-osx-cocoa-py2.7 made hickups and crashes.<br>
 
This is reported [https://gna.org/bugs/?21324 here] and [http://thread.gmane.org/gmane.science.nmr.relax.devel/4787 here.]
 
This is reported [https://gna.org/bugs/?21324 here] and [http://thread.gmane.org/gmane.science.nmr.relax.devel/4787 here.]
  
 
The problem is based on the wxPython version and 32/64 bit issues. <br>
 
The problem is based on the wxPython version and 32/64 bit issues. <br>
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It is therefore strongly recommended to install the 32 bit python package distribution.
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It is therefore strongly recommended to install the a python package distribution, which solves this.
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If one installs the "epd" enthought python distribution, this will include a working wxPython.<br>
 
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SIgn-up with preferably a university email to get the [https://www.enthought.com/products/canopy/academic/ Academic License], and you can then download for free
 
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https://www.enthought.com/repo/epd/installers/
 
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Specifically download and install:<br>
 
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epd-7.x-x-macosx-'''i386'''.dmg
 
  
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Special note about 64-bit Mac OSX
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Please procede with this guide [[Epd_canopy | Epd Canopy]].
  
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<blockquote>
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The benefits on installing this system is following:
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The macosx-x86_64 installer does not include wxPython, which a lot of ETS relies on. Even though ETS supports the use of PySide as a backend, things are much less stable under Qt. Therefore, if you want to use ETS, we recommned using the 32-bit EPD on Mac OSX.  
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# Total stand-alone installation. No messing with system files.
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</blockquote>
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# wxPython issues and compilations are taken care of
 +
# Canopy includes a code editor. Not perfect, but a good start.
  
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== Testing the Python installation ==
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=== Testing the Python installation ===
 
After installation, restart your terminal, and check path to python.
 
After installation, restart your terminal, and check path to python.
 
<source lang="bash">
 
<source lang="bash">
 
$ which python
 
$ which python
−
/Library/Frameworks/Python.framework/Versions/Current/bin/python
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/Users/XXX/Library/Enthought/Canopy_64bit/User/bin/python
 
</source>
 
</source>
  
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<source lang="python">
 
<source lang="python">
 
$ python
 
$ python
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Enthought Python Distribution -- www.enthought.com
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Enthought Canopy Python 2.7.6 | 64-bit | (default, Apr 11 2014, 11:55:30)  
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Version: 7.3-2 (32-bit)
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[GCC 4.2.1 (Apple Inc. build 5666) (dot 3)] on darwin
−
 
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Type "help", "copyright", "credits" or "license" for more information.
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Python 2.7.3 |EPD 7.3-2 (32-bit)| (default, Apr 12 2012, 11:28:34)  
 
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[GCC 4.0.1 (Apple Inc. build 5493)] on darwin
 
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Type "credits", "demo" or "enthought" for more information.
 
  
 
>>> import wx; wx.__version__; wx.__file__
 
>>> import wx; wx.__version__; wx.__file__
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'2.8.10.1'
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'2.9.2.4'
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'/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/wx/__init__.py'
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'/Users/tlinnet/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/wx/__init__.pyc'
 
</source>
 
</source>
  
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Then install pip
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==== Minfx and Bmrblib ====
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<source lang="bash">
 
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$ sudo easy_install pip
 
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</source>
 
  
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=== Minfx and Bmrblib ===
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# [[Minfx#Install | Minfx]]
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Remember to check, if there are newer versions of [http://download.gna.org/minfx minfx] and [http://download.gna.org/bmrblib bmrblib]. <br>
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# [[Bmrblib#Install | Bmrblib]]
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The [https://gna.org/projects/minfx/ minfx] and [https://gna.org/projects/bmrblib/ bmrblib] libraries can be installed on all Linux systems by typing:
 
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<source lang="bash">
 
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cd $HOME/Downloads
 
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curl http://download.gna.org/minfx/minfx-1.0.5.tar.gz -o minfx-1.0.5.tar.gz
 
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tar -xzf minfx-1.0.5.tar.gz
 
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cd minfx-1.0.5
 
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sudo pip install .
 
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cd ..
 
  
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curl http://download.gna.org/bmrblib/bmrblib-1.0.3.tar.gz -o bmrblib-1.0.3.tar.gz
 
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tar -xzf bmrblib-1.0.3.tar.gz
 
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cd bmrblib-1.0.3
 
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sudo pip install .
 
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cd
 
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</source>
 
 
Then check
 
Then check
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<source lang="python">
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{{#tag: source|
 
$ python
 
$ python
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Enthought Python Distribution -- www.enthought.com
 
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Version: 7.3-2 (32-bit)
 
−
 
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Python 2.7.3 |EPD 7.3-2 (32-bit)| (default, Apr 12 2012, 11:28:34)
 
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[GCC 4.0.1 (Apple Inc. build 5493)] on darwin
 
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Type "credits", "demo" or "enthought" for more information.
 
−
 
 
import bmrblib; bmrblib.__version__; bmrblib.__file__
 
import bmrblib; bmrblib.__version__; bmrblib.__file__
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'1.0.3'
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'{{current version bmrblib}}'
 
'/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/bmrblib/__init__.pyc'
 
'/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/bmrblib/__init__.pyc'
  
 
import minfx; minfx.__version__; minfx.__file__
 
import minfx; minfx.__version__; minfx.__file__
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'1.0.5'
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'{{current version minfx}}'
 
'/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/minfx/__init__.pyc'
 
'/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/minfx/__init__.pyc'
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</source>
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| lang="python"}}
 +
 
  
 
Check if the have been installed
 
Check if the have been installed
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</source>
 
</source>
  
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= Checking out a relax branch and build with scons =
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== Checking out a relax branch and build with scons ==
−
 
+
{{historical svn}}
 
If you would like to play with relax branch rather than the main [http://www.nmr-relax.com/download.html relax downloads], the [http://subversion.tigris.org/ Subversion] program should first be installed. <br>
 
If you would like to play with relax branch rather than the main [http://www.nmr-relax.com/download.html relax downloads], the [http://subversion.tigris.org/ Subversion] program should first be installed. <br>
 
You can see the different branches [http://svn.gna.org/viewcvs/relax/ here.] <br>
 
You can see the different branches [http://svn.gna.org/viewcvs/relax/ here.] <br>
 
First the relax sources can be checked out of the source code repository and the C modules compiled:
 
First the relax sources can be checked out of the source code repository and the C modules compiled:
  
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=== Using subversion or git ===
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==== Using subversion or git ====
 
To check out the trunk branch using the subversion client, simply type:
 
To check out the trunk branch using the subversion client, simply type:
 
<source lang="bash">
 
<source lang="bash">
Line 106: Line 76:
 
</source>
 
</source>
  
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=== Compilation of the C modules ===
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==== Compilation of the C modules ====
  
−
For the R1 and R2 and relaxation dispersion analyses, the relax C modules must be compiled.  This is done using the scons program, by simply typing:
+
For the {{:R1}} and {{:R2}} and relaxation dispersion analyses, the relax C modules must be compiled.  This is done using the scons program, by simply typing:
 
<source lang="bash">
 
<source lang="bash">
 
cd relax_trunk
 
cd relax_trunk
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</source>
 
</source>
  
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= Install brew as 'linux' package manager =
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== Install brew as 'linux' package manager ==
 
You can [http://brew.sh/ read about brew here.]<br>
 
You can [http://brew.sh/ read about brew here.]<br>
 
In short, it is like a package manager for mac, where you will be able to get linux programs to mac.
 
In short, it is like a package manager for mac, where you will be able to get linux programs to mac.
Line 120: Line 90:
 
  ruby -e "$(curl -fsSL https://raw.github.com/mxcl/homebrew/go/install)"
 
  ruby -e "$(curl -fsSL https://raw.github.com/mxcl/homebrew/go/install)"
 
</source>
 
</source>
 +
 +
Especially '''xmgrace''' for the plotting facility in mac.
  
 
== Install xmgrace ==
 
== Install xmgrace ==

Latest revision as of 11:52, 27 October 2017

Installation

Download a python distribution which include wxPython

At the time for this post, (Dec 2013), the installation of wxPython2.9-osx-cocoa-py2.7 made hickups and crashes.
This is reported here and here.

The problem is based on the wxPython version and 32/64 bit issues.
It is therefore strongly recommended to install the a python package distribution, which solves this.

Please procede with this guide Epd Canopy.

The benefits on installing this system is following:

  1. Total stand-alone installation. No messing with system files.
  2. wxPython issues and compilations are taken care of
  3. Canopy includes a code editor. Not perfect, but a good start.

Testing the Python installation

After installation, restart your terminal, and check path to python. 

$ which python
/Users/XXX/Library/Enthought/Canopy_64bit/User/bin/python

Before installing relax, it is best to be sure that the Python modules are functional by trying to import them and print the version of them: 

$ python
Enthought Canopy Python 2.7.6 | 64-bit | (default, Apr 11 2014, 11:55:30) 
[GCC 4.2.1 (Apple Inc. build 5666) (dot 3)] on darwin
Type "help", "copyright", "credits" or "license" for more information.

>>> import wx; wx.__version__; wx.__file__
'2.9.2.4'
'/Users/tlinnet/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/wx/__init__.pyc'

Minfx and Bmrblib

  1. Minfx
  2. Bmrblib

Then check 

$ python
import bmrblib; bmrblib.__version__; bmrblib.__file__
'1.0.4'
'/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/bmrblib/__init__.pyc'

import minfx; minfx.__version__; minfx.__file__
'1.0.12'
'/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/minfx/__init__.pyc'


Check if the have been installed 

pip freeze | grep "minfx\|bmrblib"

Checking out a relax branch and build with scons

Caution  The information in this section is out of date but is kept for historical reasons. The relax source code is now hosted in a git rather than svn repository.

If you would like to play with relax branch rather than the main relax downloads, the Subversion program should first be installed.
You can see the different branches here.
First the relax sources can be checked out of the source code repository and the C modules compiled:

Using subversion or git

To check out the trunk branch using the subversion client, simply type: 

svn co svn://svn.gna.org/svn/relax/trunk relax_trunk

If this svn command does not work, try: 

svn co http://svn.gna.org/svn/relax/trunk relax_trunk

Compilation of the C modules

For the R1 and R2 and relaxation dispersion analyses, the relax C modules must be compiled. This is done using the scons program, by simply typing: 

cd relax_trunk
scons

Install brew as 'linux' package manager

You can read about brew here.
In short, it is like a package manager for mac, where you will be able to get linux programs to mac. 

 ruby -e "$(curl -fsSL https://raw.github.com/mxcl/homebrew/go/install)"

Especially xmgrace for the plotting facility in mac.

Install xmgrace

xmgrace is used for plotting. 

brew install grace

Restart the terminal, and try to find xmgrace. 

which xmgrace
/usr/local/bin/xmgrace

If you cannot run xmgrace, you may need to install xquartz.

See also

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