Difference between revisions of "Cdp"
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(cdp = 'current data pipe') |
(More Python 3 fixes.) |
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| + | In relax data for different analyses are stored in different data pipes. The current data pipe is abbreviated as '''cdp''' and this Python data object is available within scripts and anywhere in the relax source code. | ||
| + | |||
== cdp - The current data pipe == | == cdp - The current data pipe == | ||
cdp is a [http://docs.python.org/2/tutorial/classes.html python class object].<br> | cdp is a [http://docs.python.org/2/tutorial/classes.html python class object].<br> | ||
| Line 4: | Line 6: | ||
Knowing this, we can access information from the class. | Knowing this, we can access information from the class. | ||
| − | === | + | === Return the list of attributes === |
<source lang="python"> | <source lang="python"> | ||
| − | print type(cdp) | + | print(type(cdp)) |
<class 'data_store.pipe_container.PipeContainer'> | <class 'data_store.pipe_container.PipeContainer'> | ||
| Line 33: | Line 35: | ||
'11_18': 360.0, '8_30': 600.0} | '11_18': 360.0, '8_30': 600.0} | ||
| − | print type(cdp.cpmg_frqs) | + | print(type(cdp.cpmg_frqs)) |
<type 'dict'> | <type 'dict'> | ||
| − | for key, value in cdp.cpmg_frqs.iteritems(): print key, value | + | for key, value in cdp.cpmg_frqs.iteritems(): |
| + | print("%s %s" % (key, value)) | ||
6_6 120.0 | 6_6 120.0 | ||
3_30 600.0 | 3_30 600.0 | ||
| Line 46: | Line 49: | ||
</source> | </source> | ||
| − | === | + | === List model type === |
<source lang="python"> | <source lang="python"> | ||
| − | print cdp.model_type, type(cdp.model_type) | + | print("%s %s" % (cdp.model_type, type(cdp.model_type))) |
disp <type 'str'> | disp <type 'str'> | ||
</source> | </source> | ||
| − | === | + | === List spectrum ID's === |
<source lang="python"> | <source lang="python"> | ||
| − | print cdp.spectrum_ids, len(cdp.spectrum_ids) | + | print("%s %s" % (cdp.spectrum_ids, len(cdp.spectrum_ids))) |
['0_2', '1_0', '2_8', '3_30', '4_4', '5_42', '6_6', '7_2', '8_30', '9_46', '10_10', '11_18', '12_26', | ['0_2', '1_0', '2_8', '3_30', '4_4', '5_42', '6_6', '7_2', '8_30', '9_46', '10_10', '11_18', '12_26', | ||
'13_38', '14_2', '15_14', '16_14', '17_30', '18_22', '19_46', '20_14', '21_34', '22_46'] 23 | '13_38', '14_2', '15_14', '16_14', '17_30', '18_22', '19_46', '20_14', '21_34', '22_46'] 23 | ||
</source> | </source> | ||
| − | === | + | === List replicate spectrum ID's === |
<source lang="python"> | <source lang="python"> | ||
| − | print cdp.replicates | + | print(cdp.replicates) |
[['0_2', '7_2', '14_2'], ['15_14', '16_14', '20_14'], ['3_30', '8_30', '17_30'], ['9_46', '19_46', '22_46']] | [['0_2', '7_2', '14_2'], ['15_14', '16_14', '20_14'], ['3_30', '8_30', '17_30'], ['9_46', '19_46', '22_46']] | ||
</source> | </source> | ||
== See also == | == See also == | ||
| + | |||
| + | [[Category:Development]] | ||
[[Category:list_objects]] | [[Category:list_objects]] | ||
Latest revision as of 18:52, 6 November 2015
In relax data for different analyses are stored in different data pipes. The current data pipe is abbreviated as cdp and this Python data object is available within scripts and anywhere in the relax source code.
Contents
cdp - The current data pipe
cdp is a python class object.
Knowing this, we can access information from the class.
Return the list of attributes
print(type(cdp))
<class 'data_store.pipe_container.PipeContainer'>
dir(cdp)
['__class__', '__clone__', '__deepcopy__', '__delattr__', '__dict__', '__doc__', '__format__',
'__getattribute__', '__hash__', '__init__', '__module__', '__new__', '__reduce__', '__reduce_ex__',
'__repr__', '__setattr__', '__sizeof__', '__str__', '__subclasshook__', '__weakref__', '_back_compat_hook','_back_compat_hook_ri_data',
'cpmg_frqs', 'cpmg_frqs_list', 'dispersion_points', 'exp_type', 'from_xml', 'hybrid_pipes', 'int_method',
'interatomic', 'is_empty', 'model_type', 'mol', 'num_time_pts', 'pipe_type', 'relax_time_list', 'relax_times',
'replicates', 'result_files', 'sigma_I', 'sim_number', 'sim_state', 'spectrometer_frq', 'spectrometer_frq_count',
'spectrometer_frq_list', 'spectrum_ids', 'spin_lock_nu1_list', 'to_xml', 'var_I', 'xml_create_hybrid_element']
Get list of CPMG frequencies
cdp.cpmg_frqs_list
[None, 40.0, 80.0, 120.0, 160.0, 200.0, 280.0, 360.0, 440.0, 520.0, 600.0, 680.0, 760.0, 840.0, 920.0]
Get list of CPMG frequencies and intensity names
cdp.cpmg_frqs
{'6_6': 120.0, '3_30': 600.0, '16_14': 280.0, '15_14': 280.0, '13_38': 760.0, '1_0': None, '0_2': 40.0,
'7_2': 40.0, '2_8': 160.0, '12_26': 520.0, '5_42': 840.0, '22_46': 920.0, '4_4': 80.0, '19_46': 920.0,
'14_2': 40.0, '9_46': 920.0, '17_30': 600.0, '10_10': 200.0, '18_22': 440.0, '20_14': 280.0, '21_34': 680.0,
'11_18': 360.0, '8_30': 600.0}
print(type(cdp.cpmg_frqs))
<type 'dict'>
for key, value in cdp.cpmg_frqs.iteritems():
print("%s %s" % (key, value))
6_6 120.0
3_30 600.0
16_14 280.0
15_14 280.0
13_38 760.0
1_0 None
...
List model type
print("%s %s" % (cdp.model_type, type(cdp.model_type)))
disp <type 'str'>
List spectrum ID's
print("%s %s" % (cdp.spectrum_ids, len(cdp.spectrum_ids)))
['0_2', '1_0', '2_8', '3_30', '4_4', '5_42', '6_6', '7_2', '8_30', '9_46', '10_10', '11_18', '12_26',
'13_38', '14_2', '15_14', '16_14', '17_30', '18_22', '19_46', '20_14', '21_34', '22_46'] 23
List replicate spectrum ID's
print(cdp.replicates)
[['0_2', '7_2', '14_2'], ['15_14', '16_14', '20_14'], ['3_30', '8_30', '17_30'], ['9_46', '19_46', '22_46']]
