Difference between revisions of "Main Page"

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== Welcome ==
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== Table of contens ==
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{| style="border: align:center; width:100%; background:#5F7F96; border: 3px solid #333;"
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{| style="color:#CC9752; padding: 10px; background: transparent;"
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!  style="background:transparent; font-size: 150%; text-decoration:underline; text-align:left;" colspan="2" | Installation, Configuration & Learning
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|-
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| style="background:transparent; color: #333; width:50%; font-weight: normal; font-size:100%; text-align:left; vertical-align:top;"|
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# '''[[:Category:Installation|Installation]]'''
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## [[Linux_Install|Linux]]
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## [[MAC_Install|MAC]]
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## [[Windows_Install|Windows]]
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# '''[[:Category:Stereo 3D Display|Stereo 3D Display]]'''
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## [[Linux XFree86 Configuration]]
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| style="background:transparent; color: #333; width:50%; font-weight: normal; font-size:100%; text-align:left; vertical-align:top;"|
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# '''[[:Category:Using NMR-relax|Using NMR-relax]]'''
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## '''[[:Category:Launching|Launching]]'''
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### [[Launching NMR-relax|Launching NMR-relax]]
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### [[Command_Line_Options|Command Line Options]]
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### [[Launching_From_a_Script|Launching From a Script]]
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## [[Mouse_Controls|Mouse Controls]]
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## '''[[:Category:Objects and Selections|Objects and Selections]]'''
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### '''[[:Category:Working with Objects|Working with Objects]]'''
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### '''[[:Category:Working with Selections|Working with Selections]]'''
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### '''[[:Category:Selector_Quick_Reference|Selector Quick Reference]]'''
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#### [[Single-word Selectors|Single-word Selectors]]
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#### [[Property Selectors|Property Selectors]]
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#### [[Selection Algebra|Selection Algebra]]
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#### [[Selection Macros|Selection Macros]]
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|}
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| align="left" valign="top" |
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{| style="color:#CC9752; padding: 10px; background: transparent;"
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!style="background:transparent; font-size: 150%; text-decoration:underline; vertical-align:top; text-align:left;"  colspan="2" |  Commands, Representations & Settings
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|-
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| style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"|
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# '''[[:Category:Commands|NMR-relax Commands]]'''
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# '''[[:Category:Settings|Settings (Documented)]]'''
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## [[Settings|All]]
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| style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"|
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# '''[[:Category:Representations|Representations]]'''
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## [[Lines|Lines]]
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## [[Sticks|Sticks]]
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## [[Ball_and_Stick|Ball and Sticks]]
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## [[Cartoon|Cartoon]]
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## [[Surface|Surface]]
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## [[Mesh|Mesh]]
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## [[Spheres|Spheres]]
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## [[Dots|Dots]]
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# '''[[:Category:Coloring|Coloring]]'''
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## [[Color|Color]]
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|}
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|-
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| align="left" valign="top" |
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{| style="color:#CC9752; padding: 10px; background: transparent;"
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! style="background:transparent; font-size: 150%; text-decoration:underline; text-align:left;" colspan="2" | Physico-chemical Modeling
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|-
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| style="background:transparent; color: #333; width:50%; font-weight: normal; font-size:100%; text-align:left; vertical-align:top;"|
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# '''[[:Category:Biochemical_Properties|Biochemical Properties]]'''
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## [[Displaying Biochemical Properties|Displaying biochemical properties]]
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## [[Surfaces_and_Voids|Surfaces and Voids]]
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| style="background:transparent; color: #333; width:50%; font-weight: normal; font-size:100%; text-align:left; vertical-align:top;"|
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# [[Modeling_and_Editing_Structures|Modeling and editing structures]]
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## [[Editing atoms|Editing Atoms]]
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## [[Molecular Sculpting|Molecular sculpting]]
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## [[Homology Modeling|Homology modeling]]
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|}
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{| style="color:#CC9752; padding: 10px; background: transparent;"
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! style="background:transparent; font-size: 150%; text-decoration:underline; text-align:left; vertical-align:top;" colspan="2" | Images & Movies
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|-
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| style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"|
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# '''[[:Category:Image Manipulation|Image Manipulation]]'''
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## [[Label|Labels]]
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## Photoshop/GIMP
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## [[Stereo_Ray|Stereo Figures]]
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## [[Publication Quality Images|Publication-quality images]]
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## [[PovRay|PovRay]]
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|
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| style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"|
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# [[Making_Movies|Making Movies]]
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## [[Software_Codecs|Codecs]]
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|}
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|-
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| align="left" valign="top" |
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{| style="color:#CC9752; padding: 10px; background: transparent;"
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! style="background:transparent; font-size: 150%; text-decoration:underline; text-align:left;" colspan="2" | Extending, Embedding & Scripting
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|-
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| style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"|
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# [[:Category:Development|NMR-relax Development]]
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# [[Scripting|Scripting]]
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## [[Example Scripts|Example Scripts]]
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## '''[[:Category:Script Library|Script Library]]'''
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# '''[[:Category:Plugins|Plugins]]'''
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## '''[[:Category:Electrostatics|Electrostatics and energy minimization.]]'''
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### [[APBS|APBS Plugin]]
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### [[Protein_contact_potential]]
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## [http://www.rubor.de/bioinf/NMR-relax_extensions.html rtools]
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## [[Plugins_Tutorial|Tutorial on writing plugins]]
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|
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| style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"|
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# High-Level Applications
 +
## Crystallography Applications
 +
### Symmetry|Symmetry
 +
### Electron Density
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## NMR Applications
 +
### Working with Structure Families
 +
## '''[[:Category:Structure_Alignment|Superimposition and RMSD]]'''
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### NMR Restraints and Analysis
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|}
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| align="left" valign="top" |
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{| style="color:#CC9752; padding: 10px; background: transparent;"
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! style="background:transparent; font-size: 150%; text-decoration:underline; text-align:left; vertical-align:top;" colspan="2"|  Third Party Applications
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|-
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| style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"|
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# [[O]]
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# [[SURFNET]]
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|
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| style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"|
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# [[Python_Integration|Python Integration]]
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# '''[[:Category:NMR-relax_Integration|NMR-relax_Integration]]'''
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## [[Nuccyl|Nuccyl]] -- Nuccyl is a great NMR-relax extension
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## [[CASTp|CASTp]] -- Binding and Active site prediction
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## [[CCTBX|CCTBX]] -- Computational Crystallography Toolbox
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## [[ProMOL]]
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## [[S2S]]
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## '''[[:Category:NMR-relax_Integration Arbitrary_Graphics_Objects|Arbitrary_Graphics_Objects]]'''
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|}
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|}
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== What's new? ==
 
{| width="100%"
 
{| width="100%"
 
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| style="vertical-align: top; width: 40%" |

Revision as of 18:25, 16 June 2013

Welcome to the NMR relax Wiki.
The community-run support site for the NMR relax relaxation dispersion analysis program.
Quick Links
Tutorials Table of Contents Commands
Script repository Cheat Sheet (PDF) FAQ
All Categories

Table of contens

Installation, Configuration & Learning
  1. Installation
    1. Linux
    2. MAC
    3. Windows
  2. Stereo 3D Display
    1. Linux XFree86 Configuration
  1. Using NMR-relax
    1. Launching
      1. Launching NMR-relax
      2. Command Line Options
      3. Launching From a Script
    2. Mouse Controls
    3. Objects and Selections
      1. Working with Objects
      2. Working with Selections
      3. Selector Quick Reference
        1. Single-word Selectors
        2. Property Selectors
        3. Selection Algebra
        4. Selection Macros
Commands, Representations & Settings
  1. NMR-relax Commands
  2. Settings (Documented)
    1. All
  1. Representations
    1. Lines
    2. Sticks
    3. Ball and Sticks
    4. Cartoon
    5. Surface
    6. Mesh
    7. Spheres
    8. Dots
  2. Coloring
    1. Color
Physico-chemical Modeling
  1. Biochemical Properties
    1. Displaying biochemical properties
    2. Surfaces and Voids
  1. Modeling and editing structures
    1. Editing Atoms
    2. Molecular sculpting
    3. Homology modeling
Images & Movies
  1. Image Manipulation
    1. Labels
    2. Photoshop/GIMP
    3. Stereo Figures
    4. Publication-quality images
    5. PovRay
  1. Making Movies
    1. Codecs
Extending, Embedding & Scripting
  1. NMR-relax Development
  2. Scripting
    1. Example Scripts
    2. Script Library
  3. Plugins
    1. Electrostatics and energy minimization.
      1. APBS Plugin
      2. Protein_contact_potential
    2. rtools
    3. Tutorial on writing plugins
  1. High-Level Applications
    1. Crystallography Applications
      1. Symmetry|Symmetry
      2. Electron Density
    2. NMR Applications
      1. Working with Structure Families
    3. Superimposition and RMSD
      1. NMR Restraints and Analysis
Third Party Applications
  1. O
  2. SURFNET
  1. Python Integration
  2. NMR-relax_Integration
    1. Nuccyl -- Nuccyl is a great NMR-relax extension
    2. CASTp -- Binding and Active site prediction
    3. CCTBX -- Computational Crystallography Toolbox
    4. ProMOL
    5. S2S
    6. Arbitrary_Graphics_Objects

What's new?

News & Updates
New Wiki This is the new wiki


Did you know...

The DPL extension (version 2.3.0) produced a SQL statement which lead to a Database error.
The reason may be an internal error of DPL or an error which you made,
especially when using DPL options like titleregexp.
Query text is:
SELECT DISTINCT `page`.page_namespace AS page_namespace,`page`.page_title AS page_title,`page`.page_id AS page_id, `page`.page_title AS sortkey, `page`.page_counter AS page_counter FROM `page` INNER JOIN `categorylinks` AS cl0 ON `page`.page_id=cl0.cl_from AND (cl0.cl_to='Analysis' OR cl0.cl_to='Script' OR cl0.cl_to='Time_of_running') WHERE 1=1 AND `page`.page_namespace IN ('0') AND `page`.page_is_redirect=0 ORDER BY page_title ASC LIMIT 500 OFFSET 0

Error message is:
Unknown column 'page.page_counter' in 'field list' (mysql-n)


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