Difference between revisions of "Grep log file"

From relax wiki
Jump to navigation Jump to search
Line 3: Line 3:
 
We also just make some line space and important points
 
We also just make some line space and important points
 
<source lang="bash">
 
<source lang="bash">
tcsh ;
+
bash ;
set IN=LOGFILE.txt
+
IN=LOGFILE.txt
set OUT=greplogfile.txt
+
OUT=greplogfile.txt
 
egrep -wi --color 'relax>| model -' LOGFILE.txt > $OUT
 
egrep -wi --color 'relax>| model -' LOGFILE.txt > $OUT
 
</source>
 
</source>

Revision as of 08:53, 17 June 2013

Grep the log file for commands

First we find which commands relax has performed, and separate into the different fitting models.
We also just make some line space and important points

bash ;
IN=LOGFILE.txt
OUT=greplogfile.txt
egrep -wi --color 'relax>| model -' LOGFILE.txt > $OUT

Then we replace instances of relax> with empty, and comment out the model line

sed -i "s/relax> //" $OUT ;
sed -i 's/^- /\n#- /' $OUT ;
sed -i 's/^minimise(/\nminimise(/' $OUT ;
sed -i 's/^results.write(/\nresults.write(/' $OUT ;
sed -i 's/^model_selection(/\nmodel_selection(/' $OUT ;
sed -i '0,/spectrum.replicated(/s//\nspectrum.replicated(/' $OUT ;
sed -i '0,/spectrum.read_intensities(/s//\nspectrum.read_intensities(/' $OUT ;

See also

Sed one-liners