Difference between revisions of "Bmrblib"
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(Link out to the project webpage.) |
(→Linux and Mac: Use of the new {{current version bmrblib}}. This requires the magic word {{#tag: ...}} to generate the <source> tags programmatically.) |
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Remember to check, if there are newer versions of [http://download.gna.org/bmrblib bmrblib]. <br> | Remember to check, if there are newer versions of [http://download.gna.org/bmrblib bmrblib]. <br> | ||
The [https://gna.org/projects/bmrblib/ bmrblib] library can be installed on all UNIX systems by typing: | The [https://gna.org/projects/bmrblib/ bmrblib] library can be installed on all UNIX systems by typing: | ||
| − | + | {{#tag: source| | |
# Change to bash, if in tcsh shell | # Change to bash, if in tcsh shell | ||
bash | bash | ||
| − | v= | + | v={{current version bmrblib}} |
cd $HOME/Downloads | cd $HOME/Downloads | ||
| − | curl http://download.gna.org/bmrblib/bmrblib- | + | curl http://download.gna.org/bmrblib/bmrblib-$v.tar.gz -o bmrblib-$v.tar.gz |
tar -xzf bmrblib-$v.tar.gz | tar -xzf bmrblib-$v.tar.gz | ||
cd bmrblib-$v | cd bmrblib-$v | ||
| Line 24: | Line 24: | ||
cd .. | cd .. | ||
| − | + | |lang="bash"}} | |
= See also = | = See also = | ||
[[Category:Installation]] | [[Category:Installation]] | ||
Revision as of 16:44, 19 October 2015
Contents
Bmrblib
Bmrblib is a Python API abstracting the Biological Magnetic Resonance Data Bank (BioMagResBank or BMRB) NMR-STAR format (http://www.bmrb.wisc.edu/). It allows the writing of NMR-STAR files for BMRB data deposition and the reading and easy extraction of data from files residing in the BMRB data bank, all without knowledge of the Self-Defining Text Archive and Retrieval (STAR) format.
Install
Guides to install on different systems.
Linux and Mac
Remember to check, if there are newer versions of bmrblib.
The bmrblib library can be installed on all UNIX systems by typing:
# Change to bash, if in tcsh shell
bash
v=1.0.4
cd $HOME/Downloads
curl http://download.gna.org/bmrblib/bmrblib-$v.tar.gz -o bmrblib-$v.tar.gz
tar -xzf bmrblib-$v.tar.gz
cd bmrblib-$v
# Then either
sudo pip install -e .
# Or
pip install .
cd ..
