Difference between revisions of "Cdp"
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== See also == | == See also == | ||
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[[Category:list_objects]] | [[Category:list_objects]] |
Revision as of 18:49, 6 November 2015
In relax data for different analyses are stored in different data pipes. The current data pipe is abbreviated as cdp and this Python data object is available within scripts and anywhere in the relax source code.
Contents
cdp - The current data pipe
cdp is a python class object.
Knowing this, we can access information from the class.
Return the list of attributes
print type(cdp)
<class 'data_store.pipe_container.PipeContainer'>
dir(cdp)
['__class__', '__clone__', '__deepcopy__', '__delattr__', '__dict__', '__doc__', '__format__',
'__getattribute__', '__hash__', '__init__', '__module__', '__new__', '__reduce__', '__reduce_ex__',
'__repr__', '__setattr__', '__sizeof__', '__str__', '__subclasshook__', '__weakref__', '_back_compat_hook','_back_compat_hook_ri_data',
'cpmg_frqs', 'cpmg_frqs_list', 'dispersion_points', 'exp_type', 'from_xml', 'hybrid_pipes', 'int_method',
'interatomic', 'is_empty', 'model_type', 'mol', 'num_time_pts', 'pipe_type', 'relax_time_list', 'relax_times',
'replicates', 'result_files', 'sigma_I', 'sim_number', 'sim_state', 'spectrometer_frq', 'spectrometer_frq_count',
'spectrometer_frq_list', 'spectrum_ids', 'spin_lock_nu1_list', 'to_xml', 'var_I', 'xml_create_hybrid_element']
Get list of CPMG frequencies
cdp.cpmg_frqs_list
[None, 40.0, 80.0, 120.0, 160.0, 200.0, 280.0, 360.0, 440.0, 520.0, 600.0, 680.0, 760.0, 840.0, 920.0]
Get list of CPMG frequencies and intensity names
cdp.cpmg_frqs
{'6_6': 120.0, '3_30': 600.0, '16_14': 280.0, '15_14': 280.0, '13_38': 760.0, '1_0': None, '0_2': 40.0,
'7_2': 40.0, '2_8': 160.0, '12_26': 520.0, '5_42': 840.0, '22_46': 920.0, '4_4': 80.0, '19_46': 920.0,
'14_2': 40.0, '9_46': 920.0, '17_30': 600.0, '10_10': 200.0, '18_22': 440.0, '20_14': 280.0, '21_34': 680.0,
'11_18': 360.0, '8_30': 600.0}
print type(cdp.cpmg_frqs)
<type 'dict'>
for key, value in cdp.cpmg_frqs.iteritems(): print key, value
6_6 120.0
3_30 600.0
16_14 280.0
15_14 280.0
13_38 760.0
1_0 None
...
List model type
print cdp.model_type, type(cdp.model_type)
disp <type 'str'>
List spectrum ID's
print cdp.spectrum_ids, len(cdp.spectrum_ids)
['0_2', '1_0', '2_8', '3_30', '4_4', '5_42', '6_6', '7_2', '8_30', '9_46', '10_10', '11_18', '12_26',
'13_38', '14_2', '15_14', '16_14', '17_30', '18_22', '19_46', '20_14', '21_34', '22_46'] 23
List replicate spectrum ID's
print cdp.replicates
[['0_2', '7_2', '14_2'], ['15_14', '16_14', '20_14'], ['3_30', '8_30', '17_30'], ['9_46', '19_46', '22_46']]