Difference between revisions of "Grep log file"
Jump to navigation
Jump to search
| Line 4: | Line 4: | ||
<source lang="bash"> | <source lang="bash"> | ||
bash ; | bash ; | ||
| − | IN=LOGFILE.txt | + | IN=LOGFILE.txt ; |
| − | OUT=greplogfile.txt | + | OUT=greplogfile.txt ; |
| − | egrep -wi --color 'relax>| model -' LOGFILE.txt > $OUT | + | egrep -wi --color 'relax>| model -' LOGFILE.txt > $OUT ; |
</source> | </source> | ||
Then we replace instances of '''relax> ''' with empty, and comment out the model line | Then we replace instances of '''relax> ''' with empty, and comment out the model line | ||
Revision as of 08:56, 28 August 2013
Grep the log file for commands
First we find which commands relax has performed, and separate into the different fitting models.
We also just make some line space and important points
bash ;
IN=LOGFILE.txt ;
OUT=greplogfile.txt ;
egrep -wi --color 'relax>| model -' LOGFILE.txt > $OUT ;
Then we replace instances of relax> with empty, and comment out the model line
sed -i "s/relax> //" $OUT ;
sed -i 's/^- /\n#- /' $OUT ;
sed -i 's/^minimise(/\nminimise(/' $OUT ;
sed -i 's/^results.write(/\nresults.write(/' $OUT ;
sed -i 's/^model_selection(/\nmodel_selection(/' $OUT ;
sed -i '0,/spectrum.replicated(/s//\nspectrum.replicated(/' $OUT ;
sed -i '0,/spectrum.read_intensities(/s//\nspectrum.read_intensities(/' $OUT ;
