Difference between revisions of "Grep log file"
Jump to navigation
Jump to search
Line 3: | Line 3: | ||
We also just make some line space and important points | We also just make some line space and important points | ||
<source lang="bash"> | <source lang="bash"> | ||
− | + | bash ; | |
− | + | IN=LOGFILE.txt | |
− | + | OUT=greplogfile.txt | |
egrep -wi --color 'relax>| model -' LOGFILE.txt > $OUT | egrep -wi --color 'relax>| model -' LOGFILE.txt > $OUT | ||
</source> | </source> |
Revision as of 08:53, 17 June 2013
Grep the log file for commands
First we find which commands relax has performed, and separate into the different fitting models.
We also just make some line space and important points
bash ;
IN=LOGFILE.txt
OUT=greplogfile.txt
egrep -wi --color 'relax>| model -' LOGFILE.txt > $OUT
Then we replace instances of relax> with empty, and comment out the model line
sed -i "s/relax> //" $OUT ;
sed -i 's/^- /\n#- /' $OUT ;
sed -i 's/^minimise(/\nminimise(/' $OUT ;
sed -i 's/^results.write(/\nresults.write(/' $OUT ;
sed -i 's/^model_selection(/\nmodel_selection(/' $OUT ;
sed -i '0,/spectrum.replicated(/s//\nspectrum.replicated(/' $OUT ;
sed -i '0,/spectrum.read_intensities(/s//\nspectrum.read_intensities(/' $OUT ;