Difference between revisions of "Tutorial for model free SBiNLab"
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(Created page with "== Background == This is a tutorial for Lau and Kaare in SBiNLab, and hopefully others. To get inspiration of example scripts files and '''see''' how the protocol is performe...") |
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and closely inspect the log for any errors. | and closely inspect the log for any errors. | ||
| − | For similar tutorial, have a look at [Tutorial_for_model-free_analysis_sam_mahdi] | + | For similar tutorial, have a look at [[Tutorial_for_model-free_analysis_sam_mahdi Tutorial for model-free analysis sam mahdi]] |
=== 01 - Test load of data === | === 01 - Test load of data === | ||
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== See also == | == See also == | ||
[[Category:Tutorials]] | [[Category:Tutorials]] | ||
[[Category:Model-free_analysis]] | [[Category:Model-free_analysis]] | ||
Revision as of 15:37, 13 October 2017
Background
This is a tutorial for Lau and Kaare in SBiNLab, and hopefully others.
To get inspiration of example scripts files and see how the protocol is performed, have a look here:
- nmr-relax-code/test_suite/system_tests/scripts/model_free/dauvergne_protocol.py
- nmr-relax-code/auto_analyses/dauvergne_protocol.py
Scripts
To get the protocol to work, we need to
- Load a PDB structure
- Assign the "data structure" in relax through spin-assignments
- Assign necessary "information" as isotope information to each spin-assignment
- Read "R1, R2 and NOE" for different magnet field strengths
- Calculate some properties
- Check the data
- Run the protocol
To work most efficiently, it is important to perform each step 1 by 1, and closely inspect the log for any errors.
For similar tutorial, have a look at Tutorial_for_model-free_analysis_sam_mahdi Tutorial for model-free analysis sam mahdi
