Trusted, Bureaucrats, Administrators
1,660
edits
Changes
exit
</source>
Let us inspect just one file date. Open in a text browser "R1_600".
It says
<source lang="text">
Residue R1 Error
1
2
3
4
5
6
7
8
9
10
11
12 1.58 0.06
13 1.23 0.05
14 1.48 0.1
15 2.06 0.04
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
139
</source>
This will probably not work. The file does not contain the same separators in the file. <br>
But let us try!
Add the following line to "sam_script.py".
<source lang="python">
relax_data.read(ri_id='R1_600', ri_type='R1', frq=599.719*1e6, file='R1_600', res_num_col=1, data_col=2, error_col=3)
</source>
Now we are just going to try this.
<source lang="bash">
relax sam_script.py
</source>
That gives some output in the command as this.
<source lang="text">
RelaxWarning: The sequence data in the line ['Residue', 'R1', 'Error'] is invalid, the residue number data 'Residue' is invalid.
RelaxWarning: The sequence data in the line ['1'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['2'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['3'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['4'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['5'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['6'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['7'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['8'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['9'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['10'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['11'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['17'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['18'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['19'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['20'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['21'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['22'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['23'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['24'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['25'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['26'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['27'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['28'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['29'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['30'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['31'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['32'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['33'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['34'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['35'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['36'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['37'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['38'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['39'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['40'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['41'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['42'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['43'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['44'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['45'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['46'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['47'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['48'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['49'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['50'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['51'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['52'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['53'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['54'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['55'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['56'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['57'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['58'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['59'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['60'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['61'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['62'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['63'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['64'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['65'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['66'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['67'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['68'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['69'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['70'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['71'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['72'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['73'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['74'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['75'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['76'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['77'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['78'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['79'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['80'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['81'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['82'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['83'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['84'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['85'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['86'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['87'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['88'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['89'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['90'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['91'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['92'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['93'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['94'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['95'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['96'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['97'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['98'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['99'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['100'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['101'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['102'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['103'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['104'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['105'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['106'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['107'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['108'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['109'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['110'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['111'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['112'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['113'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['114'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['115'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['116'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['117'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['118'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['119'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['120'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['121'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['122'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['123'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['124'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['125'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['126'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['127'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['128'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['129'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['130'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['131'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['132'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['133'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['134'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['135'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['136'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['137'] is invalid, the data is missing.
RelaxWarning: The sequence data in the line ['139'] is invalid, the data is missing.
RelaxError: The spin ID '#hRGS7:12' corresponds to multiple spins, including '#hRGS7:12@N' and '#hRGS7:12@H'.
</source>
A lot of problems! <br>
We modify the data file to look like this. Note the hashtag "#".
<source lang="text">
#Residue R1 Error
12 1.58 0.06
13 1.23 0.05
14 1.48 0.1
15 2.06 0.04
</source>
Now we are just going to try this.
<source lang="bash">
relax sam_script.py
</source>
That gives some output in the command as this.
<source lang="text">
RelaxError: The spin ID '#hRGS7:12' corresponds to multiple spins, including '#hRGS7:12@N' and '#hRGS7:12@H'.
</source>
NOTE: Instead of a "Warning", this is an "Error". <br>
This will not work.
And why? Relax does not know if the associated data is the R1 for the nitrogen or proton of spin 12. And then relax STOPS. <br>
Errors make relax STOP.
== Conclusion ==
The data is insufficient or not labelled correct.
== See also ==
[[Category:Tutorials]]
[[Category:Relaxation dispersion analysis]]