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Epd canopy

2,115 bytes added, 14:18, 15 October 2015

Forced creation of a TOC - this will improve the formatting on the main page 'Did you know...' section.

__TOC__

== Download from ==

Download from:<br>

== Install Minfx and Bmrblib and mpi4py ==

~~Remember to check, if there are newer versions of~~ # [~~http://download.gna.org/minfx minfx~~[Minfx#Install | Minfx] ~~and [http://download.gna.org/bmrblib bmrblib~~]~~. <br>The~~ # [[~~https://gna.org/projects/minfx/ minfx~~Bmrblib#Install | Bmrblib] ~~and [https://gna.org/projects/bmrblib/ bmrblib~~] ~~libraries can be installed on all Linux systems by typing:<source lang="bash">~~# ~~Switch to software usersu software~~ [[Mpi4py# ~~Activate python~~ap~~# Downloadcd $HOME/Downloads~~ ~~wget http://download.gna.org/minfx/minfx-1.0.6.tar.gztar -xzf minfx-1.0.6.tar.gzcd minfx-1.0.6#Then eitherpip install .cd ..~~ ~~wget http://download.gna.org/bmrblib/bmrblib-1.0.3.tar.gztar -xzf bmrblib-1.0.3.tar.gzcd bmrblib-1.0.3pip install .cd ..~~ ~~wget https://bitbucket.org/mpi4py/mpi4py/downloads/mpi4py-1.3.1.tar.gztar -xzf mpi4py-1.3.1.tar.gzcd mpi4py-1.3.1pip install .</source>~~Install | Mpi4py]]

== Scripts to run relax ==

</source>

== Compile program issues with scons ==

# Go into install directory

cd tcshset IND=/sbinlab2/software/python-enthought-dis/canopy-1.4.0-full-rh5-64cd $IND

# setenv PYTHON_LIBRARY XXXXX/libpython2.7.so

# libpython2.7.so

find . -name libpython2.7.so-type f

./appdata/canopy-1.4.0.1938.rh5-x86_64/lib/libpython2.7.so

./appdata/canopy-1.4.0.1938.rh5-x86_64/lib/python2.7/config/libpython2.7.so

./Canopy_64bit/User/lib/libpython2.7.so

./Canopy_64bit/System/lib/libpython2.7.so

# setenv PYTHON_EXECUTABLE XXXXX/python2.7

# find . -name python\*

# find . -name ~~python2.7~~python -type f# find .~~/appdata/canopy-1.4.0.1938.rh5~~-~~x86_64/include/~~name python2.7-type f

./appdata/canopy-1.4.0.1938.rh5-x86_64/bin/python2.7

./~~appdata~~Canopy_64bit/~~canopy-1.4.0.1938.rh5-x86_64~~User/~~lib~~bin/~~python2.7~~python

./Canopy_64bit/User/bin/python2.7

./Canopy_64bit/~~User~~System/~~lib~~bin/~~python2.7~~python

./Canopy_64bit/System/bin/python2.7

~~./Canopy_64bit/System/lib/python2.7./lib/python2.7~~

# setenv PYTHON_INCLUDE_DIR XXXX/

# find . -name Python.h-type f

./appdata/canopy-1.4.0.1938.rh5-x86_64/include/python2.7/Python.h

</source>

=== Python.h ===

[tlinnet@tomat disp_spin_speed]$ scons

scons: Reading SConscript files ...

scons: done reading SConscript files.

scons: Building targets ...

gcc -o target_functions/relax_fit.os -c -I/sbinlab2/software/python-enthought-dis/canopy-1.4.0-full-rh5-64/Canopy_64bit/User/include/python2.7 -fPIC target_functions/relax_fit.c

target_functions/relax_fit.c:21:20: error: Python.h: No such file or directory

target_functions/relax_fit.c:30: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token

target_functions/relax_fit.c:79: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token

target_functions/relax_fit.c:117: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token

target_functions/relax_fit.c:142: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token

target_functions/relax_fit.c:153: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token

target_functions/relax_fit.c:171: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'relax_fit_methods'

target_functions/relax_fit.c: In function 'initrelax_fit':

target_functions/relax_fit.c:227: error: 'relax_fit_methods' undeclared (first use in this function)

target_functions/relax_fit.c:227: error: (Each undeclared identifier is reported only once

target_functions/relax_fit.c:227: error: for each function it appears in.)

scons: *** [target_functions/relax_fit.os] Error 1

scons: building terminated because of errors.

</source>

Then try

#setenv PYTHON_LIBRARY $IND/appdata/canopy-1.4.0.1938.rh5-x86_64/lib/libpython2.7.so

#setenv PYTHON_EXECUTABLE $IND/appdata/canopy-1.4.0.1938.rh5-x86_64/bin/python2.7

setenv PYTHON_INCLUDE_DIR $IND/appdata/canopy-1.4.0.1938.rh5-x86_64/include/python2.7

</source>

Setting system environment variable '''PYTHON_INCLUDE_DIR''' to point to the dir with '''Python.h''' solved the problem.

=== For MAC ===

==== Python.h ====

echo "PYTHON_INCLUDE_DIR=/Applications/Canopy.app/appdata/canopy-1.4.0.1938.macosx-x86_64/Canopy.app/Contents/include/python2.7" >> $HOME/.bash_profile

echo "export PYTHON_INCLUDE_DIR" >> $HOME/.bash_profile

</source>

==== Wx program running on Canopy 1.4 on OS X "Please run with a Framework build of python" ====

See https://support.enthought.com/entries/22601196-wxPython-2-8-and-2-9 to fix it.

=== For Linux ===

==== Python.h ====

setenv PYTHON_INCLUDE_DIR /sbinlab2/software/python-enthought-dis/canopy-1.4.0-full-rh5-64/appdata/canopy-1.4.1.1975.rh5-x86_64/include/python2.7

# Or

cd /sbinlab2/software/python-enthought-dis/canopy-1.4.0-full-rh5-64/appdata/canopy-1.4.1.1975.rh5-x86_64/include

ln -s /sbinlab2/software/python-enthought-dis/canopy-1.4.0-full-rh5-64/appdata/canopy-1.4.1.1975.rh5-x86_64/include/python2.7 python2.7

</source>

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