Difference between revisions of "Grep log file"

From relax wiki
Jump to navigation Jump to search
Line 3: Line 3:
 
We also just make some line space and important points
 
We also just make some line space and important points
 
<source lang="bash">
 
<source lang="bash">
set IN=LOGFILE.txt ;
+
set IN=logfile.txt ;
 
set OUT=greplogfile.txt ;
 
set OUT=greplogfile.txt ;
 
egrep -wi --color 'relax>| model -' $IN > $OUT ;
 
egrep -wi --color 'relax>| model -' $IN > $OUT ;

Revision as of 09:12, 28 August 2013

Grep the log file for commands

First we find which commands relax has performed, and separate into the different fitting models.
We also just make some line space and important points

set IN=logfile.txt ;
set OUT=greplogfile.txt ;
egrep -wi --color 'relax>| model -' $IN > $OUT ;

Then we replace instances of relax> with empty, and comment out the model line

sed -i "s/relax> //" $OUT ;
sed -i 's/^- /\n#- /' $OUT ;
sed -i 's/^minimise(/\nminimise(/' $OUT ;
sed -i 's/^results.write(/\nresults.write(/' $OUT ;
sed -i 's/^model_selection(/\nmodel_selection(/' $OUT ;
sed -i '0,/spectrum.replicated(/s//\nspectrum.replicated(/' $OUT ;
sed -i '0,/spectrum.read_intensities(/s//\nspectrum.read_intensities(/' $OUT ;

See also

Sed one-liners