Open main menu

Changes

Matplotlib DPL94 R1rho R2eff

907 bytes removed, 15:53, 6 November 2015
→‎References: Switched to a labelled section transclusion for the citations.
[http://www.nmr-relax.com/manual/Dispersion_model_summary.html Refer to the manual for parameter explanation]
* {{# Evenäs, J., Malmendal, A. & Akke, M. (2001). Dynamics of the transition between open and closed conformations in a calmodulin C-terminal domain mutant. Structure 9, 185–195 [httplst://dx.doi.org/10.1016/S0969-2126(01)00575-5 DOI]Citations|Evenäs01}}* {{# Kempf, J.G. & Loria, J.P. (2004). Measurement of intermediate exchange phenomena. Methods Mol. Biol. 278, 185–231 [http://dx.doi.org/10.1385/1-59259-809-9lst:185 DOI]Citations|KempfLoria04}}* {{# Palmer, A.G. & Massi, F. (2006). Characterization of the dynamics of biomacromolecules using rotating-frame spin relaxation NMR spectroscopy. Chem. Rev. 106, 1700–1719 [httplst://dx.doi.org/10.1021/cr0404287 DOI]Citations|Massi05}}* {{# Palmer, A.G., Kroenke, C.D. & Loria, J.P. (2001). Nuclear magnetic resonance methods for quantifying microsecond-to-millisecond motions in biological macromolecules. Meth. Enzymol. 339 [httplst://dx.doi.org/10.1016/S0076-6879(01)39315-1 DOI]Citations|Palmer01}}* {{# Francesca Massi, Michael J. Grey, Arthur G. Palmer III* (2005) Microsecond timescale backbone conformational dynamics in ubiquitin studied with NMR R1ρ relaxation experiments, Protein science [httplst://dx.doi.org/10.1110/ps.041139505 DOI]Citations|PalmerMassi06}}
=== Figures ===
Ref [2], Equation 27.
Here the calculated value is noted as: $R_{eff{:Reff}$. : Equation 27: $ R_{eff} = R_{1\rho{:R1rho}} / sin^<sup>2</sup>(\thetaθ) - R_1 {{:R1}} / tan^<sup>2</sup>(\thetaθ) = R^{0{:R2zero}}_2 + R_{ex{:Rex}} $. <br>Where $R^, where {{0:R2zero}}_2$ refers to $R_{1\rho '{:R1rhoprime}}$ as seen at [[DPL94]]
Ref [3], Equation 20.
Here the calculated value is noted as: $R_2${{: $R_2 R2}} = R_{1\rho{:R1rho}} / sin^<sup>2</sup>(\thetaθ) - R_1 {{:R1}} / tan^<sup>2</sup>(\thetaθ)$ <br>. Figure 11+16, would be the reference.
Ref [4], Equation 43. $R_{eff{:Reff}} = R_{1\rho{:R1rho}} / sin^<sup>2</sup>(\thetaθ) - R_1 {{:R1}} / tan^<sup>2</sup>(\thetaθ)$.
Ref [5], Material and Methods, page 740. Here the calculated value is noted as: $R_2{{:R2}}: {{: R_2 R2}} = R^{0{:R2zero}}_2 + R_{ex{:Rex}}$. <br> Figure 4 would be the wished graphs.
Trusted, Bureaucrats
4,223

edits