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User function HTML manual links.
* Fix for the bug reported as the [https://gna.org/support/?2998 support request #2998]. CONECT records pointing to non-existent atoms can now be handled.
* Fix for [https://gna.org/bugs/?20469 bug #20469, the failure in reading X-ray PDB files using the ScientificPython parser]. The ScientificPython Geometry.Transformation module is now distributed with relax. Some linear algebra imports in the Geometry.TensorModule in newly used code paths have been fixed as well.
* Fix for [https://gna.org/bugs/?20470 bug #20470]. The [http://www.nmr-relax.com/manual/structure.read_pdb.html structure.read_pdb user function ] now accepts the alt_loc argument for specifying the alternate location indicator to read. This is used by the internal PDB reader. The bug was caught by the Structure.test_bug_20470_alternate_location_indicator system test.
* Fix for [https://gna.org/bugs/?20471 bug #20471 - the is_empty() AttributeError when reading BMRB files]. The problem was that the data pipe is_empty() method was not handling structural data correctly. The is_empty() method now belongs to the MolContainer objects rather than cdp.structure, and the object cdp.structure is not always present.
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