Trusted, Bureaucrats
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m
Fixes for the broken Gna! forum link.
* Created a basic text based progress meter in the new [http://www.nmr-relax.com/api/3.3/lib.text.progress-module.html lib.text.progress module]. This is taken from the script test_suite/shared_data/frame_order/cam/generate_base.py.
* Modifications to the [http://www.nmr-relax.com/api/3.3/test_suite.gui_tests.test_user_functions.User_functions-class.html#test_structure_add_atom User_functions.test_structure_add_atom GUI test]. As lists of lists are now accepted by the [http://www.nmr-relax.com/manual/structure_add_atom.html structure.add_atom user function], the operation in the GUI is now significantly different. Therefore many checks have been removed from the GUI test.
* Updated the minimum minfx dependency version number from 1.0.9 to 1.0.11 in the [http://www.nmr-relax.com/api/3.3/dep_check-module.html dep_check module]. This [https://{{gna.org/forum/forum.php?forum_idlink|url=2477 newest version handles infinite target function values preventing optimisation from continuing forever]. The [https://{{gna link|url=gna.org/forum/forum.php?forum_id=2475 |text=1.0.10 version is also useful as there is full support for gradients and Hessians in the log-barrier constraint algorithm]}}.
* Shifted the [http://www.nmr-relax.com/api/3.2/specific_analyses.relax_disp.variables-module.html specific_analyses.relax_disp.variables module] into [http://www.nmr-relax.com/api/3.3/lib.dispersion.variables-module.html lib.dispersion]. This is both to minimise circular dependencies, as previously the [http://www.nmr-relax.com/api/3.3/specific_analyses.relax_disp-module.html specific_analyses.relax_disp modules] import from [http://www.nmr-relax.com/api/3.2/target_functions.relax_disp-module.html target_functions.relax_disp] and vice-versa, and to allow the relax library functions to have access to these variables. This follows from a similar change to the frame order analysis in the frame_order_cleanup branch.
* Dependency fix for the [http://www.nmr-relax.com/api/3.3/auto_analyses.relax_disp_repeat_cpmg-module.html auto_analyses.relax_disp_repeat_cpmg module]. This was causing relax to fail. SciPy is an optional dependence for relax, but this module caused relax to not start if scipy was not installed. This was detected by testing relax with PyPy.