This tutorial presently cover the [http://svn.gna.org/svn/relax/branches/ relax_disp branch].<br>This branch is under development, for testing it out, you need to use the source code. See [[Installation_linux#Checking_out_a_relax_branch]].
This tutorial is based on the analysis of R1rho data, analysed in a master thesis.
set OUT=$PWD/exp_parameters.txt
echo "# DIRN I deltadof2 dpwr2slock ncyc trim ss sfrqapod_rmsd" > $OUT
foreach I (`seq 1 ${#FIDS}`)
set FID=${FIDS[$I]}; set DIRN=`dirname $FID`
set dpwr2slock=`awk '/^dpwr2slock /{f=1;next}f{print $2;exit}' procpar`
set ncyc=`awk '/^ncyc /{f=1;next}f{print $2;exit}' procpar`
set trim=`awk '/^trim /{f=1;next}f{print $2;exit}' procpar`
set ss=`awk '/^ss /{f=1;next}f{print $2;exit}' procpar`
set sfrq=`awk '/^sfrq /{f=1;next}f{print $2;exit}' procpar`
set apodrmsd=`showApod test.ft2 | grep "REMARK Automated Noise Std Dev in Processed Data:" | awk '{print $9}'`echo "$DIRN $I $deltadof2 $dpwr2slock $ncyc $trim $ss $sfrq$apodrmsd" >> $OUT
set FIDSDIRS=`cat fid_files.ls| sed 's/\/fid//g'`set DIRN=`dirname cd ${FIDSDIRS[1]}`cd $DIRN
varian
</source>
<source lang="bash">
set DIRS=`cat fid_files.ls | sed 's/\/fid//g'`sparky ${FIDSDIRS[1]}/test.ucsf
</source>
The final peak list is expected to be in:
<source lang="bash">
/peak_lists/peaks_corr_final.list
</source>
And have been saved by SPARKY, so it is in this format [[SPARKY_list]].
== Check for peak movement ==
Your should check, that the peaks do not move at the different experiments. Try opening some random spectra, and overlay them in SPARKY.<br>
Read the section in [[Tutorial_for_Relaxation_dispersion_analysis_cpmg_fixed_time_recorded_on_varian_as_fid_interleaved#Check_for_peak_movement | Check for peak movement]].