This tutorial presently cover the [http://svn.gna.org/svn/relax/branches/ relax_disp branch].<br>This branch is under development, for testing it out, you need to use the source code. See [[Installation_linux#Checking_out_a_relax_branch]].
This tutorial is based on the analysis of R1rho data, analysed in a master thesis.
set OUT=$PWD/exp_parameters.txt
echo "# DIRN I deltadof2 dpwr2slock ncyc trim ss sfrqapod_rmsd" > $OUT
foreach I (`seq 1 ${#FIDS}`)
set FID=${FIDS[$I]}; set DIRN=`dirname $FID`
set dpwr2slock=`awk '/^dpwr2slock /{f=1;next}f{print $2;exit}' procpar`
set ncyc=`awk '/^ncyc /{f=1;next}f{print $2;exit}' procpar`
set trim=`awk '/^trim /{f=1;next}f{print $2;exit}' procpar`
set ss=`awk '/^ss /{f=1;next}f{print $2;exit}' procpar`
set sfrq=`awk '/^sfrq /{f=1;next}f{print $2;exit}' procpar`
set apodrmsd=`showApod test.ft2 | grep "REMARK Automated Noise Std Dev in Processed Data:" | awk '{print $9}'`echo "$DIRN $I $deltadof2 $dpwr2slock $ncyc $trim $ss $sfrq$apodrmsd" >> $OUT
=== Make a file with paths to name of .ft2 files fil ===Then we make a file list of filepaths to .ft2 files.
<source lang="bash">
set DIRS=`cat fid_filesecho "test.ft2" > ft2_file.ls | sed 's/\/fid/</g'`source>
for DIR === Measure the height or sum in a spectral point box ===<source lang="bash">mkdir peak_lists foreach line ("`tail -n+2 exp_parameters.txt`") set argv=( $line ) set DIRN=$1 set I=$2 set deltadof2=$3 set dpwr2slock=$4 set ncyc=$5 set trim=$6 set ss=$7 set sfrq=$8 echo $I set FNAME=${I}_${deltadof2}_${dpwr2slock}_${ncyc} cd $DIRN seriesTab -in ../peaks_list.tab -out ${FNAME}_max_standard.ser -list ../ft2_file.ls -max seriesTab -in ../peaks_list.tab -out ${FNAME}_max_dx1_dy1.ser -list ../ft2_file.ls -v max -d dx 1 -dy 1 * seriesTab -in ../*peaks_list.tab -out ${FNAME}_sum_dx1_dy1.ser -list .ft2 > ft2_files./ft2_file.ls-sum -dx 1 -dy 1cat ft2_files cp ${FNAME}_max_standard.lsser ../peak_lists cd ..end
</source>
=Analyse in relax = == Preparation ==== Measure the height or sum in a spectral point box = Prepare directory for relax run ===Then we make a directory ready for relax