Tutorial for model free SBiNLab
Jump to navigation
Jump to search
Background
This is a tutorial for Lau and Kaare in SBiNLab, and hopefully others.
To get inspiration of example scripts files and see how the protocol is performed, have a look here:
- nmr-relax-code/test_suite/system_tests/scripts/model_free/dauvergne_protocol.py
- nmr-relax-code/auto_analyses/dauvergne_protocol.py
Scripts
To get the protocol to work, we need to
- Load a PDB structure
- Assign the "data structure" in relax through spin-assignments
- Assign necessary "information" as isotope information to each spin-assignment
- Read "R1, R2 and NOE" for different magnet field strengths
- Calculate some properties
- Check the data
- Run the protocol
To work most efficiently, it is important to perform each step 1 by 1, and closely inspect the log for any errors.
For similar tutorial, have a look at [Tutorial_for_model-free_analysis_sam_mahdi]
