|
|
| Line 69: |
Line 69: |
| | # Center carriage In ppm | | # Center carriage In ppm |
| | yCAR_ppm = 118.078 | | yCAR_ppm = 118.078 |
| − | </source>
| |
| − |
| |
| − | = Google Cloud Computing =
| |
| − | This follows the same idea as from [[Run_relax_at_cloud.sagemath.com|Run relax at cloud.sagemath.com]]
| |
| − |
| |
| − | == pricing ==
| |
| − | For this example of '''Google Cloud Computing''', we wan't to have access to as many computer cores as possible
| |
| − |
| |
| − | * The pricing explained here: https://cloud.google.com/pricing/
| |
| − | * A pricing calculator is here: https://cloud.google.com/products/calculator/
| |
| − |
| |
| − | '''For the price calculation of:'''
| |
| − | * '''1''' server
| |
| − | * using '''Free: Debian, CentOS, ...'''
| |
| − | * with a '''regular''' VM Class
| |
| − | * Instance type of (HIGH CPU) '''n1-highcpu-32 (vCPUs: 32, RAM: 28.80 GB)'''
| |
| − | * 0 '''SSD'''
| |
| − | * Datacenter location '''Europe'''
| |
| − | * Average days per month each server is running: '''1''' days, per month.
| |
| − | The '''monthly''' price was of November 2015, '''$32.26'''.
| |
| − |
| |
| − | At November 2015, google give free trial of '''300$'''. https://cloud.google.com/free-trial/
| |
| − |
| |
| − | Note, there are some limitations: https://cloud.google.com/free-trial/#/faq
| |
| − |
| |
| − | == Start free trial ==
| |
| − | Please first see this video:
| |
| − | * https://cloud.google.com/compute/docs/linux-quickstart or https://www.youtube.com/watch?v=BnEhYaUY4sA
| |
| − |
| |
| − | Go to: https://cloud.google.com/free-trial/ and click '''Start your free trial'''.
| |
| − |
| |
| − | You need to sign up with a credit card. To prevent mis-abuse from robots and hackers.
| |
| − |
| |
| − | '''Then go to: https://console.developers.google.com'''
| |
| − | * You should already have a project called '''My First Project'''.
| |
| − | * '''Create a new project''' in top right corner of the browser under the dropdown of '''My First Project'''.
| |
| − | * Call the new project '''relax''' with '''App Engine location''' at '''europe-west'''
| |
| − |
| |
| − | == Create a Virtual Machine instance ==
| |
| − | * Click then at '''Try Compute Engine''' or go to https://console.developers.google.com/compute
| |
| − | * Click '''Create instance'''
| |
| − | * '''Name:''' relax
| |
| − | * '''Zone:''' Don't change this. As of Nov 2015, it seems that if you change this, you cannot select more than 2 vCPU's
| |
| − | * '''Machine type:''' From the very bottom, create '''8 vCPUs'''. 32 cores need an upgrade to you account, [https://cloud.google.com/free-trial/#/faq and the free trial only allows for 8 vCPU's.]
| |
| − | * '''Boot disk:''' 10 GB of Ubuntu 14.04 LTS
| |
| − | * '''Zone:''' Now change this to: europe-west1-c
| |
| − | * Let the rest be default and click '''Create'''.
| |
| − |
| |
| − | == Access Virtual Machine instance ==
| |
| − | * Go to https://console.developers.google.com/compute
| |
| − | * In the line of '''relax''', click '''SSH'''
| |
| − | * This should open a '''browser terminal window'''
| |
| − |
| |
| − | == Get relax and unpack ==
| |
| − |
| |
| − | {{#tag:source|
| |
| − | v={{current version relax}}
| |
| − |
| |
| − | # Get relax
| |
| − | curl http://download.gna.org/relax/relax-$v.GNU-Linux.x86_64.tar.bz2 -o relax-$v.GNU-Linux.x86_64.tar.bz2
| |
| − |
| |
| − | # Make home bin
| |
| − | mkdir -p $HOME/bin
| |
| − | tar xvjf relax-{{current version relax}}.GNU-Linux.x86_64.tar.bz2
| |
| − | rm relax-{{current version relax}}.GNU-Linux.x86_64.tar.bz2
| |
| − | ln -s $HOME/relax-{{current version relax}}/relax $HOME/bin
| |
| − |
| |
| − | # Add $HOME/bin to PATH
| |
| − | echo '' >> $HOME/.bashrc
| |
| − | echo 'export PATH=$PATH:$HOME/bin' >> $HOME/.bashrc
| |
| − | source $HOME/.bashrc
| |
| − | |lang="bash"
| |
| − | }}
| |
| − |
| |
| − | Solve depencies. See also [[Installation_linux|Installation linux]]
| |
| − | {{#tag:source|
| |
| − | sudo apt-get -y install python-numpy
| |
| − | |lang="bash"
| |
| − | }}
| |
| − |
| |
| − | Then test relax
| |
| − | {{#tag:source|
| |
| − | relax -i
| |
| − | |lang="bash"
| |
| − | }}
| |
| − |
| |
| − | Then install other packages
| |
| − | Solve depencies. See also [[Installation_linux|Installation linux]]
| |
| − | {{#tag:source|
| |
| − | sudo apt-get -y install python-scipy python-matplotlib python-pip
| |
| − | sudo apt-get -y install openmpi-bin openmpi-doc libopenmpi-dev
| |
| − | sudo pip install mpi4py
| |
| − | sudo pip install epydoc
| |
| − |
| |
| − | # Check installation
| |
| − | relax -i
| |
| − | |lang="bash"
| |
| − | }}
| |
| − |
| |
| − | == Inspect server ==
| |
| − |
| |
| − | Install these very good server packages
| |
| − | Solve depencies. See alsp [[Installation_linux|Installation linux]]
| |
| − | {{#tag:source|
| |
| − | sudo apt-get -y install htop
| |
| − | |lang="bash"
| |
| − | }}
| |
| − |
| |
| − | Then check server
| |
| − | {{#tag:source|
| |
| − | uptime
| |
| − | whoami
| |
| − | lscpu
| |
| − | htop -u `whoami`
| |
| − | |lang="bash"
| |
| − | }}
| |
| − |
| |
| − | Then check mpirun
| |
| − | {{#tag:source|
| |
| − | mpirun --version
| |
| − | mpirun --report-bindings -np 4 echo "hello world"
| |
| − | mpirun --np 8 relax --multi='mpi4py'
| |
| − | |lang="bash"
| |
| − | }}
| |
| − |
| |
| − | ==Install trunk of relax==
| |
| − |
| |
| − | === Solve dependencies. ===
| |
| − | See alsp [[Installation_linux|Installation linux]]
| |
| − | {{#tag:source|
| |
| − | sudo apt-get -y install subversion scons grace
| |
| − | |lang="bash"
| |
| − | }}
| |
| − |
| |
| − | === Checkout relax and build. ===
| |
| − | {{#tag:source|
| |
| − | svn co svn://svn.gna.org/svn/relax/trunk relax_trunk
| |
| − |
| |
| − | # Build
| |
| − | cd relax_trunk
| |
| − | scons
| |
| − |
| |
| − | # Link to executable
| |
| − | cd $HOME
| |
| − | mkdir -p $HOME/bin
| |
| − | ln -s $HOME/relax_trunk/relax $HOME/bin/relax_trunk
| |
| − |
| |
| − | # See relax info
| |
| − | relax_trunk -i
| |
| − |
| |
| − | |lang="bash"
| |
| − | }}
| |
| − |
| |
| − | ===install Minfx===
| |
| − | See [[Minfx]]
| |
| − | {{#tag:source|
| |
| − | v={{current version minfx}}
| |
| − |
| |
| − | mkdir -p $HOME/Downloads
| |
| − | cd $HOME/Downloads
| |
| − | curl http://download.gna.org/minfx/minfx-$v.tar.gz -o minfx-$v.tar.gz
| |
| − | tar -xzf minfx-$v.tar.gz
| |
| − | cd minfx-$v
| |
| − | sudo pip install .
| |
| − | cd $HOME
| |
| − |
| |
| − | # Test relax
| |
| − | relax_trunk -i
| |
| − | |lang="bash"
| |
| − | }}
| |
| − |
| |
| − | ===install Bmrblib===
| |
| − | See [[Bmrblib]]
| |
| − | {{#tag:source|
| |
| − | v={{current version bmrblib}}
| |
| − |
| |
| − | mkdir -p $HOME/Downloads
| |
| − | cd $HOME/Downloads
| |
| − | curl http://download.gna.org/bmrblib/bmrblib-$v.tar.gz -o bmrblib-$v.tar.gz
| |
| − | tar -xzf bmrblib-$v.tar.gz
| |
| − | cd bmrblib-$v
| |
| − | sudo pip install .
| |
| − | cd $HOME
| |
| − |
| |
| − | # Test relax
| |
| − | relax_trunk -i
| |
| − | |lang="bash"
| |
| − | }}
| |
| − |
| |
| − | ==Check installation of relax==
| |
| − | {{#tag:source|
| |
| − | relax_trunk --time -x
| |
| − | |lang="bash"
| |
| − | }}
| |
| − |
| |
| − | ==Transfer files back and forth to the server==
| |
| − | Se
| |
| − | * https://cloud.google.com/compute/docs/tutorials/transfer-files
| |
| − |
| |
| − | === Install gcloud===
| |
| − | See https://cloud.google.com/sdk/
| |
| − |
| |
| − | On your own computer
| |
| − | <source lang="python">
| |
| − | cd $HOME/Downloads
| |
| − | curl https://sdk.cloud.google.com | bash
| |
| − | source $HOME/.bash_profile
| |
| − | gcloud init
| |
| − | </source>
| |
| − |
| |
| − | This will start a browser to authenticate you. When it ask for a ID, just write "test" and say no to cloning.
| |
| − |
| |
| − | Then go to:
| |
| − | * https://console.developers.google.com/compute
| |
| − | * In the line of relax, click SSH, and drop down to: '''View gcloud command'''.
| |
| − |
| |
| − | It could look like this. Try this in your own terminal. This should make some SSH keys and bring you to the server
| |
| − | <source lang="text">
| |
| − | gcloud compute --project "relax-1143" ssh --zone "europe-west1-c" "relax"
| |
| − | </source>
| |
| − |
| |
| − | This should bring you to the google server.
| |
| − | <source lang="bash">
| |
| − | lscpu
| |
| − | cat $HOME/.ssh/authorized_keys
| |
| − | exit
| |
| − |
| |
| − | # At your own computer
| |
| − | ls -l $HOME/.ssh/google*
| |
| − | cat $HOME/.ssh/config
| |
| − | ssh-add -l
| |
| − | ssh-add $HOME/.ssh/google_compute_engine
| |
| − | ssh-add -l
| |
| − | </source>
| |
| − |
| |
| − | === Copy files ===
| |
| − | See: https://cloud.google.com/sdk/gcloud/reference/compute/copy-files
| |
| − |
| |
| − | The ssh command was
| |
| − | <source lang="bash">
| |
| − | gcloud compute --project "relax-1143" ssh --zone "europe-west1-c" "relax"
| |
| − | </source>
| |
| − |
| |
| − | We make a test file and copy it
| |
| − | <source lang="bash">
| |
| − | touch test.txt
| |
| − | gcloud compute --project "relax-1143" copy-files test.txt relax:~ --zone "europe-west1-c"
| |
| − |
| |
| − | # Try a directory
| |
| − | mkdir testdir
| |
| − | cp test.txt testdir
| |
| − | gcloud compute --project "relax-1143" copy-files testdir relax:~ --zone "europe-west1-c"
| |
| − |
| |
| − | # Back again
| |
| − | cd testdir
| |
| − | gcloud compute --project "relax-1143" copy-files relax:~/testdir . --zone "europe-west1-c"
| |
| − | </source>
| |
| − |
| |
| − | === ssh-config with gcloud ===
| |
| − | See https://cloud.google.com/sdk/gcloud/reference/compute/config-ssh
| |
| − |
| |
| − | gcloud compute config-ssh makes SSHing to virtual machine instances easier by adding an alias for each instance to the user SSH configuration (~/.ssh/config) file.
| |
| − |
| |
| − | <source lang="bash">
| |
| − | gcloud compute --project "relax-1143" config-ssh
| |
| − | cat $HOME/.ssh/config
| |
| − |
| |
| − | # ssh in
| |
| − | ssh relax.europe-west1-c.relax-1143
| |
| − | exit
| |
| − |
| |
| − | # Use sed to change value of your local computes ssh config file
| |
| − | grep 'relax.europe-west1-c.relax-1143' $HOME/.ssh/config
| |
| − | sed 's/relax.europe-west1-c.relax-1143/gcc_relax/g' $HOME/.ssh/config
| |
| − | sed -i.bak 's/relax.europe-west1-c.relax-1143/gcc_relax/g' $HOME/.ssh/config
| |
| − | ls -l $HOME/.ssh/config*
| |
| − | grep 'gcc_relax' $HOME/.ssh/config
| |
| − | ssh gcc_relax
| |
| − | </source>
| |
| − |
| |
| − | === Use scp and rsync ===
| |
| − |
| |
| − | {{#tag:source|
| |
| − | #First fast check
| |
| − | touch test2.txt
| |
| − | scp test2.txt gcc_relax:
| |
| − | ssh gcc_relax
| |
| − | ls
| |
| − | exit
| |
| − |
| |
| − | # Or use rsync
| |
| − | mkdir dirtest
| |
| − | rsync --progress -avzhe ssh ./dirtest gcc_relax:
| |
| − | ssh gcc_relax
| |
| − | ls
| |
| − | rmdir dirtest
| |
| − | exit
| |
| − | |lang="bash"
| |
| − | }}
| |
| − |
| |
| − | ==STOP the google instance after test to stop the billing of computation==
| |
| − |
| |
| − | ===By browser===
| |
| − | Go to:
| |
| − | * https://console.developers.google.com/compute
| |
| − | * Tick the '''relax''' project and click the "Stop" button.
| |
| − |
| |
| − | ===By terminal===
| |
| − | <source lang="bash">
| |
| − | # Get at list of projects
| |
| − | gcloud compute --project "relax-1143" instances list
| |
| − |
| |
| − | # Start it, it takes 30 seconds.
| |
| − | gcloud compute --project "relax-1143" instances start --zone "europe-west1-c" "relax"
| |
| − | ssh gcc_relax
| |
| − | exit
| |
| − |
| |
| − | # Stop it through terminal
| |
| − | gcloud compute --project "relax-1143" instances stop --zone "europe-west1-c" "relax"
| |
| − | # This should now not work
| |
| − | ssh gcc_relax
| |
| | </source> | | </source> |
