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Relax 3.1.0

969 bytes added, 17:11, 5 September 2014
Added more references.
= Description =
After four years of development by numerous NMR spectroscopists, the relaxation dispersion analysis in relax is finally ready for release! [Morin 2014] This support is complete and includes almost all analytic and numeric dispersion models in existence. These have been labelled as [[R2eff]], [[No Rex]], [[LM63]] [Luz and Meiboom 1963], [[LM63 3-site]] [Luz and Meiboom 1963], [[CR72]] [Carver and Richards 1972], [[IT99]] [Ishima and Torchia 1999], [[TSMFK01]] [Tollinger et al., 2001], [[NS CPMG 2-site expanded]], [[NS CPMG 2-site 3D]], [[NS CPMG 2-site star]], [[M61]] [Meiboom 1961], [[DPL94]] [Davis et al., 1994], [[TP02] [Trott and Palmer 2002]], [[TAP03]] [Trott et al., 2003], [[MP05]] [Miloushev and Palmer 2005], [[NS R1rho 2-site]], [[MQ CR72]], and [[MMQ 2-site]], mainly named after the authors and publication date. It includes support for single, zero, double, and multiple quantum CPMG data, including combined proton-heteronuclear data, and off-resonance R1rho data. An automated protocol has been developed to simplify the analysis and a GUI has been designed around this auto-analysis. Calculations have been [[OpenMPI|parallelised]] at the spin cluster and Monte Carlo simulation level for speed.
* The [[M61 skew]] R1rho-type analytic model - the Meiboom 1961 2-site equation for all time scales with pA >> pB and with parameters {R1rho', ..., pA, dw, kex} [Meiboom 1961].
* The [[DPL94]] R1rho-type analytic model - the Davis et al., 1994 2-site fast exchange equation extending the 'M61' model for off-resonance data with parameters {R1rho', ..., phi_ex, kex} [Davis et al., 1994].
* The [[TP02]] R1rho-type analytic model - the Trott and Palmer 2002 2-site equation for all time scales with pA >> pB and with parameters {R1rho', ..., pA, dw, kex}[Trott and Palmer 2002].* The [[TAP03]] R1rho-type analytic model - the Trott et al., 2003 off-resonance 2-site equation for all time scales with the weak condition pA >> pB and with parameters {R1rho', ..., pA, dw, kex}[Trott et al., 2003].* The [[MP05]] R1rho-type analytic model - the Miloushev and Palmer 2005 off-resonance 2-site equation for all time scales with parameters {R1rho', ..., pA, dw, kex}[Miloushev and Palmer 2005].
* The [[NS R1rho 2-site]] R1rho numeric model - the model for 2-site exchange using 3D magnetisation vectors with the parameters {R1rho', ..., pA, dw, kex}.
* The [[MQ CR72]] MMQ-type analytic model - the Carver and Richards 1972 2-site model for most time scales expanded for MMQ CPMG data by Korzhnev et al., 2004 with the parameters {R20, ..., pA, dw, dwH, kex}.
* [*Luz and Meiboom 1963] Luz, Z. and Meiboom, S. (1963). Nuclear magnetic resonance study of protolysis of trimethylammonium ion in aqueous solution - order of reaction with respect to solvent. ''J. Chem. Phys.'', '''39'''(2), 366-370. (DOI [http://dx.doi.org/10.1063/1.1734254 10.1063/1.1734254]).
* [*Meiboom 1961] Meiboom, S. (1961). Nuclear magnetic resonance study of proton transfer in water. ''J. Chem. Phys.'', '''34'''(2), 375-388. (DOI [http://dx.doi.org/10.1063/1.1700960 10.1063/1.1700960]).
* [*Miloushev and Palmer 2005] Miloushev, V. Z. and Palmer, 3rd, A. G. (2005). R(1rho) relaxation for two-site chemical exchange: general approximations and some exact solutions. ''J. Magn. Reson.'', '''177'''(2), 221-227. (DOI [http://dx.doi.org/10.1016/j.jmr.2005.07.023 10.1016/j.jmr.2005.07.023]).
* [*Morin 2014] Morin, S., Linnet, T. E., Lescanne, M., Schanda, P., Thompson, G. S., Tollinger, M., Teilum, K., Gagne, S., Marion, D., Griesinger, C., Blackledge, M., and d’Auvergne, E. J. (2014). relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data. ''Bioinformatics'', '''30'''(15), 2219-2220. (DOI [http://dx.doi.org/10.1093/bioinformatics/btu166 10.1093/bioinformatics/btu166]).
* [*Tollinger et al., 2001] Tollinger, M., Skrynnikov, N. R., Mulder, F. A. A., Forman-Kay, J. D., and Kay, L. E. (2001). Slow dynamics in folded and unfolded states of an sh3 domain. ''J. Am. Chem. Soc.'', '''123'''(46), 11341-11352. (DOI [http://dx.doi.org/10.1021/ja011300z 10.1021/ja011300z]).
* [*Trott and Palmer 2002] Trott, O. and Palmer, 3rd, A. G. (2002). R1rho relaxation outside of the fast-exchange limit. ''J. Magn. Reson.'', '''154'''(1), 157-160. (DOI [http://dx.doi.org/10.1006/jmre.2001.2466 10.1006/jmre.2001.2466]).* [*Trott et al., 2003] Trott, O., Abergel, D., and Palmer, A. (2003). An average-magnetization analysis of R-1 rho relaxation outside of the fast exchange. ''Mol. Phys.'', '''101'''(6), 753-763. (DOI [http://dx.doi.org/10.1080/0026897021000054826 10.1080/0026897021000054826]).
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