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Converted all of the tracker links to wiki format.
* Updated the frame order auto-analysis for the time -> system.time user function change.
* Fix for the GUI status bar element widths. Fixed widths in pixels causes text truncation on many systems, depending on the width of the main relax window. Instead variable widths should be used to allow wxPython to more elegantly present the text while minimising truncation.
* Created a system test for catching [https://gna.org/bugs/?24601 bug #24601]. This is the failure of the optimisation of the 'R2eff' dispersion model when peaks are missing from one spectrum, as reported by Petr Padrta at https://gna.org/bugs/?24601. The test uses his data and script to trigger the bug.* Simplified the Relax_disp.test_bug_24601_r2eff_missing_data system test. This is to allow the test to catch [https://gna.org/bugs/?24601 bug #24601 ] to complete in a reasonable time (2 seconds on one system).
* Fix for the independence of the relax library. As lib.system was using the status object, the library independence was broken. To work around this, the module has simply been shifted into the pipe_control package.
* Added some missing oxygen icons to allow the relax manual to compile. These are the 128x128 EPS versions of the places/folder-development.png and places/folder-favorites.png Oxygen icons recently introduced. For completeness the 32x32, 48x48, and 128x128 PNG versions of the icons have also been added. To help create these EPS icons in the future, the graphics/README file has been added with a description of the *.eps.gz file creation.
<section begin=bugfixes/>
* Fix for bug #24218 ([https://gna.org/bugs/?24218)bug #24218]. This is the incorrect labelling of alignment tensors by the align_tensor.matrix_angles user function when a subset of tensors is specified. The logic for the labels was expanded from being only for all tensors to handling subsets.* Bug fix for the structure.read_pdb user function (bug #24300, [https://gna.org/bugs/?24300)bug #24300]. When the merge flag is True, and both multiple structures and multiple models are present, the structure.read_pdb user function would fail with a RelaxError. The problem was that the molecule index was simply not being updated correctly.* Fix for [https://gna.org/bugs/?24601 bug #24601]. This is the failure of the optimisation of the 'R2eff' dispersion model when peaks are missing from one spectrum, as reported by Petr Padrta at https://gna.org/bugs/?24601. To handle the missing data, the peak intensity keys are now checked for in the spin container peak_intensities data structure. This is both for the R2eff model optimisation as well as the data back-calculation. A warning is given when the key is missing. The relaxation dispersion base_data_loop() method has been modified to now yield the spin ID string, as this is used in the warnings. In addition, the Grace plotting code in the relax library was also modified. When peak intensity keys are missing, some of the Grace plots will have no data. The code will now generate a plot for that data set, but detect the missing data and allow an empty plot to be created.
<section end=bugfixes/>
