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Tutorial for model free SBiNLab

846 bytes added, 11:45, 14 October 2017
While the analysis is running, these commands could be used to check the logfile for errors
<source lang="bash">
### Check convergence # For chi2cat 04_run_default_with_tolerance_lim.log | grep -A 10 "Chi-squared test:" # For other tests
cat 04_run_default_with_tolerance_lim.log | grep -A 10 "Identical "
cat 04_run_default_with_tolerance_lim.log | grep -A 10 "Identical model-free models test:"cat 04_run_default_with_tolerance_lim.log | grep -A 10 "Identical diffusion tensor parameter test:"cat 04_run_default_with_tolerance_lim.log | grep -A 10 "Identical model-free parameter test:" # To look for not converged errors# For chi2cat 04_run_default_with_tolerance_lim.log | grep -B 7 "The chi-squared value has not converged." # For other testscat 04_run_default_with_tolerance_lim.log | grep -B 7 " have not converged."cat 04_run_default_with_tolerance_lim.log | grep -B 7 "The model-free models have not converged."cat 04_run_default_with_tolerance_lim.log | grep -B 7 "The diffusion parameters have not converged."cat 04_run_default_with_tolerance_lim.log | grep -B 7 " The model-free parameters have not converged."
</source>
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