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Tutorial for model free SBiNLab

1,267 bytes added, 22:50, 18 October 2017
<source lang="bash">
mkdir 20171010_model_free_2_HADDOCK
cp 20171010_model_free_HADDOCK20171010_model_free/*.dat 20171010_model_free_2_HADDOCKcp 20171010_model_free_HADDOCK20171010_model_free/*.pdb 20171010_model_free_2_HADDOCK
# Get scripts
<source lang="bash">
mkdir 20171010_model_free_3_HADDOCK
cp 20171010_model_free_HADDOCK20171010_model_free/*.dat 20171010_model_free_3_HADDOCKcp 20171010_model_free_HADDOCK20171010_model_free/*.pdb 20171010_model_free_3_HADDOCK
# Get scripts
sed -i 's/0.1*$/0.05/' NOE_600MHz_new.dat
sed -i 's/0.1*$/0.05/' NOE_750MHz.dat
</source>
 
And a new one, changing the NOE error, and deselecting N-terminal.<br>
Consistency test, found that this stretch contained outliers.
<source lang="bash">
mkdir 20171010_model_free_4_HADDOCK
cp 20171010_model_free/*.dat 20171010_model_free_4_HADDOCK
cp 20171010_model_free/*.pdb 20171010_model_free_4_HADDOCK
 
# Get scripts
cd 20171010_model_free_4_HADDOCK
git init
git remote add origin git@github.com:tlinnet/relax_modelfree_scripts.git
git fetch
git checkout -t origin/master
 
# Change NOE error
sed -i 's/0.1*$/0.05/' NOE_600MHz_new.dat
sed -i 's/0.1*$/0.05/' NOE_750MHz.dat
 
# Make deselection
echo "#" > deselect.txt
cat R1_600MHz_new_model_free.dat | grep -P "ArcCALD\t151" >> deselect.txt
cat R1_600MHz_new_model_free.dat | grep -P "ArcCALD\t152" >> deselect.txt
cat R1_600MHz_new_model_free.dat | grep -P "ArcCALD\t153" >> deselect.txt
cat R1_600MHz_new_model_free.dat | grep -P "ArcCALD\t154" >> deselect.txt
cat R1_600MHz_new_model_free.dat | grep -P "ArcCALD\t155" >> deselect.txt
cat R1_600MHz_new_model_free.dat | grep -P "ArcCALD\t156" >> deselect.txt
cat R1_600MHz_new_model_free.dat | grep -P "ArcCALD\t157" >> deselect.txt
cat R1_600MHz_new_model_free.dat | grep -P "ArcCALD\t158" >> deselect.txt
cat R1_600MHz_new_model_free.dat | grep -P "ArcCALD\t159" >> deselect.txt
</source>
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