Difference between revisions of "Main Page"

From relax wiki
Jump to navigation Jump to search
(→‎What's new?: Added an old news entry for the 5.0.0 release.)
 
(85 intermediate revisions by 3 users not shown)
Line 1: Line 1:
 
__NOTOC__
 
__NOTOC__
 
{| align="center" style="padding-bottom: 4em;"
 
{| align="center" style="padding-bottom: 4em;"
|+ style="font-size:210%; font-weight: bold; color:#032d45; text-align:center; padding: 5px; margin-bottom: 4px;" | Welcome to the NMR relax Wiki.
+
|+ style="font-size:210%; font-weight: bold; color:#032d45; text-align:center; padding: 5px; margin-bottom: 4px;" |
 +
Welcome to the relax Wiki.
 
|- style="text-align:center; font-weight:bold; color: #032d45; font-size: 140%; font-style: italic; font-family: serif;"
 
|- style="text-align:center; font-weight:bold; color: #032d45; font-size: 140%; font-style: italic; font-family: serif;"
| The community-run support site for the NMR [http://www.nmr-relax.com/ relax] relaxation dispersion analysis program.
+
| The community-run support site for [http://www.nmr-relax.com/ relax], a program for the study of molecular dynamics using experimental NMR data.
|- style="text-align:center; font-weight:bold; color: #032d45; font-size: 140%; font-style: italic; font-family: serif;"
 
<!-- | New accounts: email NOREPLY (@) gmail dot com -->
 
<!-- |- style="text-align:center; font-weight:bold; color: #6d6003; font-size: 140%; font-style: italic; font-family: serif;" -->
 
 
|}
 
|}
  
{| align="center" width="45%" style="background: #EDEBD5; margin-bottom: 4em; border-bottom: 1px solid #AFB29E; border-left: 1px solid #AFB29E; border-right: 1px solid #AFB29E;"
+
{| align="center" width="45%" style="font-size: 1.1em; color #61021F; background: #EDEBD5; margin-bottom: 4em; border-bottom: 1px solid #AFB29E; border-left: 1px solid #AFB29E; border-right: 1px solid #AFB29E;"
|+ style="font-size: 1.4em; font-weight: bold; color: #032d45; text-align:center; background: #5F7F96; padding-top:0.5em; padding-bottom: 0.25em; border-top: 2px solid #AFB29E; border-bottom: 1px solid #fff;" |Quick Links
+
|+ style="font-size: 1.4em; font-weight: bold; color: #032d45; text-align:center; background: #5F7F96; padding-top:0.5em; padding-bottom: 0.25em; border-top: 2px solid #AFB29E; border-bottom: 1px solid #fff;" | Quick Links
 
|-  
 
|-  
| style="font-size: 1.1em; color #61021F; padding: 0.5em 1em 0.5em 3em;"|'''[[:Category:Tutorials|Tutorials]]''' || '''[[TOPTOC|Table of Contents]]''' || '''[[:Category:Commands|Commands]]'''
+
| style="padding: 0.5em 1em 0.5em 3em;" | '''[[Table_of_contents|Table of contents]]'''
 +
| style="padding: 0.5em 1em 0.5em 3em;" | '''[[:Category:Tutorials|Tutorials]]'''
 +
| style="padding: 0.5em 1em 0.5em 3em;" | '''[[:Category:Commands|Commands]]'''
 
|-
 
|-
| style="font-size: 1.1em; color #61021F; padding: 0.5em 1em 0.5em 3em;"|'''[[:Category:Script|Script repository]]'''  
+
| style="padding: 0.5em 1em 0.5em 3em;" | '''[[:Category:FAQ|FAQ]]'''
|| '''[[CheatSheet| Cheat Sheet]]''' (''[[Media:NMR-relax_CheatSheet.pdf|PDF]]'')
+
| style="padding: 0.5em 1em 0.5em 3em;" | '''[[:Category:Release Notes|relax releases]]'''
|| '''[[:Category:FAQ|FAQ]]'''
+
| style="padding: 0.5em 1em 0.5em 3em;" | '''[[Special:Categories| All Categories]]'''
 
|-
 
|-
| style="font-size: 1.1em; color #61021F; padding: 0.5em 1em 0.5em 3em;"|'''[[Special:Categories| All Categories]]'''
+
| style="padding: 0.5em 1em 0.5em 3em;" | '''[[Manual|Read the manual and get help]]'''
||
 
||
 
<!-- | style="font-size: 1.1em; color #61021F; padding: 0.5em 1em 0.5em 3em;"|'''[[Gallery]]''' | '''[[Covers]]''' -->
 
<!-- || '''[[:Category:Plugins|Plugins]]''' -->
 
<!--  ||'''[[GoogleSearch]]''' -->
 
 
|}
 
|}
  
== Table of contents ==
+
== User contributions - How to edit pages at the wiki ==
{| style="border: align:center; width:100%; background:#5F7F96; border: 3px solid #333;"
 
|-
 
| align="left" valign="top" |
 
 
 
{| style="color:#CC9752; padding: 10px; background: transparent;"
 
!  style="background:transparent; font-size: 150%; text-decoration:underline; text-align:left;" colspan="2" | Installation, Configuration & Learning
 
|-
 
| style="background:transparent; color: #333; width:50%; font-weight: normal; font-size:100%; text-align:left; vertical-align:top;"|
 
# '''[[:Category:Installation|Installation]]'''
 
## [[Installation linux]]
 
## [[Installation test| Test your installation]]
 
## [[Installation_windows]]
 
# '''[[:Category:Tutorials|Tutorial]]'''
 
## [[Tutorial_for_adding_relaxation_dispersion_models_to_relax]]
 
 
 
| style="background:transparent; color: #333; width:50%; font-weight: normal; font-size:100%; text-align:left; vertical-align:top;"|
 
# '''[[:Category:Using NMR-relax|Using NMR-relax]]'''
 
## '''[[:Category:Launching|Launching]]'''
 
### [[Launching NMR-relax|Launching NMR-relax]]
 
### [[Command_Line_Options|Command Line Options]]
 
### [[Launching_From_a_Script|Launching From a Script]]
 
## [[Mouse_Controls|Mouse Controls]]
 
## '''[[:Category:Objects and Selections|Objects and Selections]]'''
 
### '''[[:Category:Working with Objects|Working with Objects]]'''
 
### '''[[:Category:Working with Selections|Working with Selections]]'''
 
### '''[[:Category:Selector_Quick_Reference|Selector Quick Reference]]'''
 
#### [[Single-word Selectors|Single-word Selectors]]
 
#### [[Property Selectors|Property Selectors]]
 
#### [[Selection Algebra|Selection Algebra]]
 
#### [[Selection Macros|Selection Macros]]
 
|}
 
  
|}
+
Please read the [[How_to_edit_pages_at_the_wiki | guidelines here.]]
  
== What's new? ==
+
== What's new?==
 
{| width="100%"
 
{| width="100%"
 +
<!-- -->
 +
<!-- This is the updates -->
 +
<!-- -->
 
| style="vertical-align: top; width: 40%" |
 
| style="vertical-align: top; width: 40%" |
 
{| class="jtable" style="float: left; width: 90%;"
 
{| class="jtable" style="float: left; width: 90%;"
 
|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News &amp; Updates
 
|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News &amp; Updates
 +
! Version 5 of relax.
 +
| The [[relax 5.0.0|latest relax release]] now supports the new versions of wxPython (Phoenix), giving relax a more modern GUI.
 +
|-
 +
! Migration to SourceForge
 +
| After the Gna! shutdown at the start of 2017, relax has finally in 2019 been fully [https://sourceforge.net/p/nmr-relax/mailman/message/36580981/ migrated to the SourceForge infrastructure].
 +
|-
 +
! Gna! is permanently shut down!
 +
| A migration to another open source infrastructure is planned.  This will include web hosting for http://www.nmr-relax.com, source code repositories, bug and other trackers, new reports, download pages, and possible a svn to git conversion.
 +
|-
 +
! Tutorial added
 +
| [[Tutorial_for_sorting_data_stored_as_numpy_to_on-resonance_R1rho_analysis | Tutorial for sorting data stored as numpy to on-resonance R1rho analysis]]
 +
|-
 +
! Version 4 of relax
 +
| With the [[relax 4.0.0|latest relax release]] merging in years of developments in the frame order analysis, the major number has been incremented to '''relax 4'''.
 +
|-
 +
! Tutorial added
 +
| [[Tutorial_for_the_relaxation_dispersion_auto-analysis_in_the_GUI | Tutorial for manual regarding the relaxation dispersion auto-analysis in the GUI]]
 +
|-
 +
! Tutorial added
 +
| [[Tutorial_for_R1/R2_Relaxation_curve-fitting_analysis_on_varian_recorded_as_fid_interleaved | Tutorial for R1/R2 Relaxation curve-fitting analysis on varian recorded as fid interleaved]]
 +
|-
 +
! Matplotlib example added
 +
| [[Matplotlib_example | Matplotlib example]]
 +
|-
 +
! Tutorial added
 +
| [[Tutorial_for_Relaxation_dispersion_analysis_r1rho_fixed_time_recorded_on_varian_as_sequential_spectra | Relaxation dispersion analysis R1_rho recorded on varian]]
 +
|-
 +
! Tutorial added
 +
| [[Tutorial_for_Relaxation_dispersion_analysis_cpmg_fixed_time_recorded_on_varian_as_fid_interleaved | Relaxation dispersion analysis cpmg fixed time recorded on varian as fid interleaved]]
 +
|-
 +
! Tutorial added
 +
| [[Tutorial_for_adding_relaxation_dispersion_models_to_relax | Adding relaxation dispersion models to relax]]
 +
|-
 +
! wiki namespace changed
 +
| The wiki is now placed at: http://wiki.nmr-relax.com as of 19 of July 2013
 +
|-
 +
! GPL License
 +
| The [[License]] has been changed to GPL v3.
 
|-
 
|-
 
! New Wiki
 
! New Wiki
Line 72: Line 77:
 
|}
 
|}
  
 +
<!-- -->
 
<!-- This is the random category finder -->
 
<!-- This is the random category finder -->
 
+
<!-- -->
 
|style="vertical-align: top; width: 40%"|
 
|style="vertical-align: top; width: 40%"|
 
{| class="jtable" style="float: right; width: 90%"
 
{| class="jtable" style="float: right; width: 90%"
Line 81: Line 87:
 
<DPL>
 
<DPL>
 
namespace=
 
namespace=
category=Analysis|Script|Time_of_running
+
category=
 
includepage=*
 
includepage=*
 
includemaxlength=850
 
includemaxlength=850
Line 88: Line 94:
 
randomcount=1
 
randomcount=1
 
mode=userformat
 
mode=userformat
addpagecounter=true
 
 
listseparators=,<h3>[[%PAGE%]]</h3>,,\n
 
listseparators=,<h3>[[%PAGE%]]</h3>,,\n
 
</DPL>
 
</DPL>
Line 94: Line 99:
 
<div style="clear: both;"></div>
 
<div style="clear: both;"></div>
 
|}
 
|}
| <!-- This is the random cover finder -->
+
|
<!-- | -->
+
|style="vertical-align: top; width: 18%"|
<!-- |style="vertical-align: top; width: 18%"| -->
+
 
<!-- <DPL> -->
+
<!-- -->
<!-- imagecontainer=Images -->
+
<!-- This is the random screenshot finder -->
<!-- randomcount=1 -->
+
<!-- -->
<!-- escapelinks=false -->
+
{| class="jtable" style="float: right; width: 90%"
<!-- openreferences=true -->
+
|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" |Random screenshots
<!-- listseparators=[[,%PAGE%,|thumb|185px|A Random NMR-relax image. See [[Images]].]],\n -->
+
|<div class="screenshots" >
<!-- ordermethod=none -->
+
<slideshow sequence="random" transition="fade" refresh="5000">
<!-- </DPL> -->
+
<div>[[Image:Screenshot_start.png|thumb|right|200px|relax starting interface]]</div>
 +
<div>[[Image:Analysis_wizard.png|thumb|right|200px|The analysis selection wizard]]</div>
 +
<div>[[Image:Analysis_noe.png|thumb|right|200px|Steady-state NOE analysis]]</div>
 +
<div>[[Image:Analysis_r1.png|thumb|right|200px|R1 analysis]]</div>
 +
<div>[[Image:Analysis_r2.png|thumb|right|200px|R2 analysis]]</div>
 +
<div>[[Image:Analysis_mf.png|thumb|right|200px|Model-free analysis]]</div>
 +
<div>[[Image:Relax_controller.png|thumb|right|200px|The relax controller]]</div>
 +
<div>[[Image:Spin_viewer.png|thumb|right|200px|Spin viewer window]]</div>
 +
<div>[[Image:Results_viewer.png|thumb|right|200px|Results viewer window]]</div>
 +
<div>[[Image:Pipe_editor.png|thumb|right|200px|Pipe editor window]]</div>
 +
<div>[[Image:Relax_prompt.png|thumb|right|200px|relax prompt window]]</div>
 +
<div>[[Image:About_gui.png|thumb|right|200px|About GUI screen]]</div>
 +
<div>[[Image:About_relax.png|thumb|right|200px|About relax screen]]</div>
 +
</slideshow>
 +
</div>
 +
<div style="clear: both;"></div>
 
|}
 
|}

Latest revision as of 11:38, 29 September 2023

Welcome to the relax Wiki.
The community-run support site for relax, a program for the study of molecular dynamics using experimental NMR data.
Quick Links
Table of contents Tutorials Commands
FAQ relax releases All Categories
Read the manual and get help

User contributions - How to edit pages at the wiki

Please read the guidelines here.

What's new?

News & Updates
Version 5 of relax. The latest relax release now supports the new versions of wxPython (Phoenix), giving relax a more modern GUI.
Migration to SourceForge After the Gna! shutdown at the start of 2017, relax has finally in 2019 been fully migrated to the SourceForge infrastructure.
Gna! is permanently shut down! A migration to another open source infrastructure is planned. This will include web hosting for http://www.nmr-relax.com, source code repositories, bug and other trackers, new reports, download pages, and possible a svn to git conversion.
Tutorial added Tutorial for sorting data stored as numpy to on-resonance R1rho analysis
Version 4 of relax With the latest relax release merging in years of developments in the frame order analysis, the major number has been incremented to relax 4.
Tutorial added Tutorial for manual regarding the relaxation dispersion auto-analysis in the GUI
Tutorial added Tutorial for R1/R2 Relaxation curve-fitting analysis on varian recorded as fid interleaved
Matplotlib example added Matplotlib example
Tutorial added Relaxation dispersion analysis R1_rho recorded on varian
Tutorial added Relaxation dispersion analysis cpmg fixed time recorded on varian as fid interleaved
Tutorial added Adding relaxation dispersion models to relax
wiki namespace changed The wiki is now placed at: http://wiki.nmr-relax.com as of 19 of July 2013
GPL License The License has been changed to GPL v3.
New Wiki This is the new wiki
Did you know...

%PAGE%

Official relax releases
relax logo
relax version 3.0.0
Previous version Next version
← relax 2.2.5 relax 3.0.1 →

Keywords relax library
Release type Major feature
Release date 6 August 2013

The PDF version of the relax 3.0.0 user manual The relax 3.0.0 user manual

Description

This is the first release of the new relax 3 series. This release marks a major shift of relax towards becoming a scientific computing environment specialised for the study of molecular dynamics using experimental biophysical data. It is designed to be a replacement for numerical computational environments such as GNU Octave, MATLAB, Mathematica, Maple, etc. From the perspective of a user, however, not much has changed. There are only a few modifications to the prompt, script, or graphical user interfaces. Most changes are for the power user as they are rather in the backend. The ..→

Random screenshots
relax starting interface
The analysis selection wizard
Steady-state NOE analysis
R1 analysis
R2 analysis
Model-free analysis
The relax controller
Spin viewer window
Results viewer window
Pipe editor window
relax prompt window
About GUI screen
About relax screen