Difference between revisions of "Main Page"

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|+ style="font-size:210%; font-weight: bold; color:#032d45; text-align:center; padding: 5px; margin-bottom: 4px;" | Welcome to the NMR relax Wiki.
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|+ style="font-size:210%; font-weight: bold; color:#032d45; text-align:center; padding: 5px; margin-bottom: 4px;" |
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|- style="text-align:center; font-weight:bold; color: #6d6003; font-size: 140%; font-style: italic; font-family: serif;"
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Welcome to the relax Wiki.
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| The community-run support site for the [http://www.nmr-relax.com/] NMR relaxation dispersion analysis program.
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|- style="text-align:center; font-weight:bold; color: #032d45; font-size: 140%; font-style: italic; font-family: serif;"
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|- style="text-align:center; font-weight:bold; color: #6d6003; font-size: 140%; font-style: italic; font-family: serif;"
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| The community-run support site for [http://www.nmr-relax.com/ relax], a program for the study of molecular dynamics using experimental NMR data.
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| New accounts: email jason (dot) vertrees (@) gmail dot com
 
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{| align="center" width="45%" style="font-size: 1.1em; color #61021F; background: #EDEBD5; margin-bottom: 4em; border-bottom: 1px solid #AFB29E; border-left: 1px solid #AFB29E; border-right: 1px solid #AFB29E;"
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|+ style="font-size: 1.4em; font-weight: bold; color: #032d45; text-align:center; background: #5F7F96; padding-top:0.5em; padding-bottom: 0.25em; border-top: 2px solid #AFB29E; border-bottom: 1px solid #fff;" |Quick Links
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|+ style="font-size: 1.4em; font-weight: bold; color: #032d45; text-align:center; background: #5F7F96; padding-top:0.5em; padding-bottom: 0.25em; border-top: 2px solid #AFB29E; border-bottom: 1px solid #fff;" | Quick Links
 
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| style="font-size: 1.1em; color #61021F; padding: 0.5em 1em 0.5em 3em;"|'''[[:Category:Tutorials|Tutorials]]''' || '''[[TOPTOC|Table of Contents]]''' || '''[[:Category:Commands|Commands]]'''
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| style="padding: 0.5em 1em 0.5em 3em;" | '''[[Table_of_contents|Table of contents]]'''
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| style="padding: 0.5em 1em 0.5em 3em;" | '''[[:Category:Tutorials|Tutorials]]'''
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| style="padding: 0.5em 1em 0.5em 3em;" | '''[[:Category:Commands|Commands]]'''
 
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| style="font-size: 1.1em; color #61021F; padding: 0.5em 1em 0.5em 3em;"|'''[[:Category:Script_Library|Script Library]]''' || '''[[:Category:Plugins|Plugins]]''' || '''[[:Category:FAQ|FAQ]]'''
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| style="padding: 0.5em 1em 0.5em 3em;" | '''[[:Category:FAQ|FAQ]]'''
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| style="padding: 0.5em 1em 0.5em 3em;" | '''[[:Category:Release Notes|relax releases]]'''
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| style="padding: 0.5em 1em 0.5em 3em;" | '''[[Special:Categories| All Categories]]'''
 
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| style="font-size: 1.1em; color #61021F; padding: 0.5em 1em 0.5em 3em;"|'''[[Gallery]]''' | '''[[Covers]]'''
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| style="padding: 0.5em 1em 0.5em 3em;" | '''[[Manual|Read the manual and get help]]'''
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||'''[[CheatSheet|PyMOL Cheat Sheet]]''' (''[[Media:PymolRef.pdf|PDF]]'')
 
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== Welcome ==
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== User contributions - How to edit pages at the wiki ==
  
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See categories here:
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Please read the [[How_to_edit_pages_at_the_wiki | guidelines here.]]
  
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[[Special:Categories]]
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== What's new?==
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|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News &amp; Updates
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! Version 5 of relax.
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| The [[relax 5.0.0|latest relax release]] now supports the new versions of wxPython (Phoenix), giving relax a more modern GUI.
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|-
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! Migration to SourceForge
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| After the Gna! shutdown at the start of 2017, relax has finally in 2019 been fully [https://sourceforge.net/p/nmr-relax/mailman/message/36580981/ migrated to the SourceForge infrastructure].
 +
|-
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! Gna! is permanently shut down!
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| A migration to another open source infrastructure is planned.  This will include web hosting for http://www.nmr-relax.com, source code repositories, bug and other trackers, new reports, download pages, and possible a svn to git conversion.
 +
|-
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! Tutorial added
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| [[Tutorial_for_sorting_data_stored_as_numpy_to_on-resonance_R1rho_analysis | Tutorial for sorting data stored as numpy to on-resonance R1rho analysis]]
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|-
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! Version 4 of relax
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| With the [[relax 4.0.0|latest relax release]] merging in years of developments in the frame order analysis, the major number has been incremented to '''relax 4'''.
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|-
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! Tutorial added
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| [[Tutorial_for_the_relaxation_dispersion_auto-analysis_in_the_GUI | Tutorial for manual regarding the relaxation dispersion auto-analysis in the GUI]]
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|-
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! Tutorial added
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| [[Tutorial_for_R1/R2_Relaxation_curve-fitting_analysis_on_varian_recorded_as_fid_interleaved | Tutorial for R1/R2 Relaxation curve-fitting analysis on varian recorded as fid interleaved]]
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|-
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! Matplotlib example added
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| [[Matplotlib_example | Matplotlib example]]
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|-
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! Tutorial added
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| [[Tutorial_for_Relaxation_dispersion_analysis_r1rho_fixed_time_recorded_on_varian_as_sequential_spectra | Relaxation dispersion analysis R1_rho recorded on varian]]
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|-
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! Tutorial added
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| [[Tutorial_for_Relaxation_dispersion_analysis_cpmg_fixed_time_recorded_on_varian_as_fid_interleaved | Relaxation dispersion analysis cpmg fixed time recorded on varian as fid interleaved]]
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|-
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! Tutorial added
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| [[Tutorial_for_adding_relaxation_dispersion_models_to_relax | Adding relaxation dispersion models to relax]]
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|-
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! wiki namespace changed
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| The wiki is now placed at: http://wiki.nmr-relax.com as of 19 of July 2013
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|-
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! GPL License
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| The [[License]] has been changed to GPL v3.
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! New Wiki
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| This is the new wiki
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|<div class="screenshots" >
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<slideshow sequence="random" transition="fade" refresh="5000">
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<div>[[Image:Screenshot_start.png|thumb|right|200px|relax starting interface]]</div>
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<div>[[Image:Analysis_wizard.png|thumb|right|200px|The analysis selection wizard]]</div>
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<div>[[Image:Analysis_noe.png|thumb|right|200px|Steady-state NOE analysis]]</div>
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<div>[[Image:Analysis_r1.png|thumb|right|200px|R1 analysis]]</div>
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<div>[[Image:Analysis_r2.png|thumb|right|200px|R2 analysis]]</div>
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<div>[[Image:Analysis_mf.png|thumb|right|200px|Model-free analysis]]</div>
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<div>[[Image:Relax_controller.png|thumb|right|200px|The relax controller]]</div>
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<div>[[Image:Spin_viewer.png|thumb|right|200px|Spin viewer window]]</div>
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<div>[[Image:Results_viewer.png|thumb|right|200px|Results viewer window]]</div>
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<div>[[Image:Pipe_editor.png|thumb|right|200px|Pipe editor window]]</div>
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<div>[[Image:Relax_prompt.png|thumb|right|200px|relax prompt window]]</div>
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<div>[[Image:About_gui.png|thumb|right|200px|About GUI screen]]</div>
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<div>[[Image:About_relax.png|thumb|right|200px|About relax screen]]</div>
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Latest revision as of 11:38, 29 September 2023

Welcome to the relax Wiki.
The community-run support site for relax, a program for the study of molecular dynamics using experimental NMR data.
Quick Links
Table of contents Tutorials Commands
FAQ relax releases All Categories
Read the manual and get help

User contributions - How to edit pages at the wiki

Please read the guidelines here.

What's new?

News & Updates
Version 5 of relax. The latest relax release now supports the new versions of wxPython (Phoenix), giving relax a more modern GUI.
Migration to SourceForge After the Gna! shutdown at the start of 2017, relax has finally in 2019 been fully migrated to the SourceForge infrastructure.
Gna! is permanently shut down! A migration to another open source infrastructure is planned. This will include web hosting for http://www.nmr-relax.com, source code repositories, bug and other trackers, new reports, download pages, and possible a svn to git conversion.
Tutorial added Tutorial for sorting data stored as numpy to on-resonance R1rho analysis
Version 4 of relax With the latest relax release merging in years of developments in the frame order analysis, the major number has been incremented to relax 4.
Tutorial added Tutorial for manual regarding the relaxation dispersion auto-analysis in the GUI
Tutorial added Tutorial for R1/R2 Relaxation curve-fitting analysis on varian recorded as fid interleaved
Matplotlib example added Matplotlib example
Tutorial added Relaxation dispersion analysis R1_rho recorded on varian
Tutorial added Relaxation dispersion analysis cpmg fixed time recorded on varian as fid interleaved
Tutorial added Adding relaxation dispersion models to relax
wiki namespace changed The wiki is now placed at: http://wiki.nmr-relax.com as of 19 of July 2013
GPL License The License has been changed to GPL v3.
New Wiki This is the new wiki
Did you know...

%PAGE%

The Baldwin 2014 2-site exact solution relaxation dispersion model for SQ CPMG-type data. This model is labelled as B14 full in relax.

The advantage of this code will be that you'll always get the right answer provided you've got 2-site exchange, in-phase magnetisation and on-resonance pulses.

Equation

The paper main equation 50
[math] R_{2,\textrm{eff}} = \frac{R_2^A+R_2^B+k_{\textrm{EX}}}{2}-\frac{N_{\textrm{CYC}}}{T_{\textrm{rel}}}\cosh{}^{-1}(v_{1c}) - \frac{1}{T_{\textrm{rel}}}\ln{\left( \frac{1+y}{2} + \frac{1-y}{2\sqrt{v_{1c}^2-1}}(v_2 + 2k_{\textrm{AB}}p_D )\right)} \\ = R_{2,\textrm{eff}}^{\textrm{CR72}} - \frac{1}{T_{\textrm{rel}}}\ln{\left( \frac{1+y}{2} + \frac{1-y}{2\sqrt{v_{1c}^2-1}}(v_2 + 2k_{\textrm{AB}}p_D )\right)} [/math]

Which have these following ..→

Random screenshots
relax starting interface
The analysis selection wizard
Steady-state NOE analysis
R1 analysis
R2 analysis
Model-free analysis
The relax controller
Spin viewer window
Results viewer window
Pipe editor window
relax prompt window
About GUI screen
About relax screen
Retrieved from "http://wiki.nmr-relax.com/wiki/index.php?title=Main_Page&oldid=8098"