Difference between revisions of "Relax 1.2.2"
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{{lowercase title}} | {{lowercase title}} | ||
| − | = Description = | + | {{infobox relax release |
| + | | version = 1.2.2 | ||
| + | | prev = 1.2.1 | ||
| + | | next = 1.2.3 | ||
| + | | keywords = Operating system compatibility | ||
| + | | type = Major feature | ||
| + | | date = 20 February 2006 | ||
| + | | manual = yes | ||
| + | }} | ||
| + | |||
| + | == Description == | ||
<section begin=description/> | <section begin=description/> | ||
| − | This release improves compatibility for different operating systems including Unix, Mac OS X, and Windows. To achieve this, the make system has been replaced by the Sconstruct system. Both the Dasha and Modelfree4 code has been significantly improved. A number of bugs have also been fixed including: | + | This release improves compatibility for different operating systems including Unix, Mac OS X, and Windows. To achieve this, the make system has been replaced by the Sconstruct system. Both the [[Dasha]] and [[Modelfree4]] code has been significantly improved. A number of bugs have also been fixed including: |
| − | * The [http://www.nmr-relax.com/api/1.2/generic_fns.dasha-pysrc.html#Dasha.create_script automatically generated Dasha script] has been fixed. Previously the optimise command used was | + | * The [http://www.nmr-relax.com/api/1.2/generic_fns.dasha-pysrc.html#Dasha.create_script automatically generated Dasha script] has been fixed. Previously the optimise command used was <code>min all</code> or <code>lmin all</code>. This is incorrect and the proper syntax is <code>min m n</code> or <code>lmin m n</code> where m is the first residue number while n is the last. |
| − | * The code of [http://www.nmr-relax.com/api/1.2/generic_fns.value-module.html generic_fns/value.py], [http://www.nmr-relax.com/api/1.2/generic_fns.diffusion_tensor-module.html generic_fns/diffusion_tensor.py], and [http://www.nmr-relax.com/api/1.2/specific_fns.model_free-module.html specific_fns/model_free.py] has been fixed to properly handle the local | + | * The code of [http://www.nmr-relax.com/api/1.2/generic_fns.value-module.html generic_fns/value.py], [http://www.nmr-relax.com/api/1.2/generic_fns.diffusion_tensor-module.html generic_fns/diffusion_tensor.py], and [http://www.nmr-relax.com/api/1.2/specific_fns.model_free-module.html specific_fns/model_free.py] has been fixed to properly handle the local {{:tau_m}} parameter as well as the global {{:tau_m}} parameter. |
| − | * The local | + | * The local {{:tau_m}} parameter can now also be part of the parameter set for an [http://www.nmr-relax.com/manual/dx_map.html OpenDX map of the chi-squared space]. |
* The optimisation code has been fixed to handle the unstable, broken Numeric Python packages so that the Cholesky Hessian modification works again and the eigenvalue decomposition (which now freezes Python) is avoided. | * The optimisation code has been fixed to handle the unstable, broken Numeric Python packages so that the Cholesky Hessian modification works again and the eigenvalue decomposition (which now freezes Python) is avoided. | ||
| − | * The file [http://www.nmr-relax.com/api/1.2/generic_fns.palmer-module.html generic_fns/palmer.py] has been modified to gracefully handle a Modelfree4 bug whereby the | + | * The file [http://www.nmr-relax.com/api/1.2/generic_fns.palmer-module.html generic_fns/palmer.py] has been modified to gracefully handle a [[Modelfree4]] bug whereby the <code>mfout</code> output file has been corrupted due to the fusion of columns. |
<section end=description/> | <section end=description/> | ||
| − | = Links = | + | == Links == |
<section begin=links/> | <section begin=links/> | ||
For reference, the following links are also part of the announcement for this release: | For reference, the following links are also part of the announcement for this release: | ||
| − | * [http://wiki.nmr-relax.com/Relax_1.2. | + | * [http://wiki.nmr-relax.com/Relax_1.2.2 Official release notes] |
| − | * | + | * {{gna link|url=gna.org/forum/forum.php?forum_id=1082|text=Gna! news item}} |
* [http://article.gmane.org/gmane.science.nmr.relax.user/135 Gmane] | * [http://article.gmane.org/gmane.science.nmr.relax.user/135 Gmane] | ||
* [http://www.mail-archive.com/relax-users@gna.org/msg00008.html Mail archive] | * [http://www.mail-archive.com/relax-users@gna.org/msg00008.html Mail archive] | ||
| Line 29: | Line 39: | ||
<section end=links/> | <section end=links/> | ||
| − | = Announcements = | + | == Announcements == |
{{:relax release announcements}} | {{:relax release announcements}} | ||
| − | = See also = | + | == See also == |
| + | * [http://www.nmr-relax.com/api/1.2/ The relax 1.2 API documentation] | ||
{{:relax release see also}} | {{:relax release see also}} | ||
Latest revision as of 21:47, 8 October 2020
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| relax version 1.2.2 | |||||
| |||||
| Keywords | Operating system compatibility | ||||
|---|---|---|---|---|---|
| Release type | Major feature | ||||
| Release date | 20 February 2006 | ||||
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 The relax 1.2.2 user manual | |||||
Contents
Description
This release improves compatibility for different operating systems including Unix, Mac OS X, and Windows. To achieve this, the make system has been replaced by the Sconstruct system. Both the Dasha and Modelfree4 code has been significantly improved. A number of bugs have also been fixed including:
- The automatically generated Dasha script has been fixed. Previously the optimise command used was
min allorlmin all. This is incorrect and the proper syntax ismin m norlmin m nwhere m is the first residue number while n is the last.
- The code of generic_fns/value.py, generic_fns/diffusion_tensor.py, and specific_fns/model_free.py has been fixed to properly handle the local τm parameter as well as the global τm parameter.
- The local τm parameter can now also be part of the parameter set for an OpenDX map of the chi-squared space.
- The optimisation code has been fixed to handle the unstable, broken Numeric Python packages so that the Cholesky Hessian modification works again and the eigenvalue decomposition (which now freezes Python) is avoided.
- The file generic_fns/palmer.py has been modified to gracefully handle a Modelfree4 bug whereby the
mfoutoutput file has been corrupted due to the fusion of columns.
Links
For reference, the following links are also part of the announcement for this release:
Announcements
If you would like to receive announcements about new relax versions, please subscribe to the relax announcement mailing list. This list only receives ~10 emails per year. It is archived at the SourceForge archives and in The Mail Archive.
See also
- The combined release notes for all relax versions (warning, this is very large).
- The combined release descriptions for all relax versions.
- The combined release metadata for all relax versions.
- The combined release features for all relax versions.
- The combined release changes for all relax versions (warning, this is very large).
- The combined release bugfixes for all relax versions.
- The combined release announcement links for all relax versions.
