Difference between revisions of "Relax 1.2.2"

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(→‎See also: Added a link to the API documentation.)
m (→‎Links: Fix the broken Gna! forum link by switching to {{gna link}}.)
 
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{{lowercase title}}
 
{{lowercase title}}
  
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= Description =
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{{infobox relax release
 +
| version  = 1.2.2
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| prev    = 1.2.1
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| next    = 1.2.3
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| keywords = Operating system compatibility
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| type    = Major feature
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| date    = 20 February 2006
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| manual  = yes
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}}
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== Description ==
  
 
<section begin=description/>
 
<section begin=description/>
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This release improves compatibility for different operating systems including Unix, Mac OS X, and Windows.  To achieve this, the make system has been replaced by the Sconstruct system.  Both the Dasha and Modelfree4 code has been significantly improved.  A number of bugs have also been fixed including:
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This release improves compatibility for different operating systems including Unix, Mac OS X, and Windows.  To achieve this, the make system has been replaced by the Sconstruct system.  Both the [[Dasha]] and [[Modelfree4]] code has been significantly improved.  A number of bugs have also been fixed including:
  
−
* The [http://www.nmr-relax.com/api/1.2/generic_fns.dasha-pysrc.html#Dasha.create_script automatically generated Dasha script] has been fixed.  Previously the optimise command used was 'min all' or 'lmin all'.  This is incorrect and the proper syntax is 'min m n' or 'lmin m n' where m is the first residue number while n is the last.
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* The [http://www.nmr-relax.com/api/1.2/generic_fns.dasha-pysrc.html#Dasha.create_script automatically generated Dasha script] has been fixed.  Previously the optimise command used was <code>min all</code> or <code>lmin all</code>.  This is incorrect and the proper syntax is <code>min m n</code> or <code>lmin m n</code> where m is the first residue number while n is the last.
  
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* The code of [http://www.nmr-relax.com/api/1.2/generic_fns.value-module.html generic_fns/value.py], [http://www.nmr-relax.com/api/1.2/generic_fns.diffusion_tensor-module.html generic_fns/diffusion_tensor.py], and [http://www.nmr-relax.com/api/1.2/specific_fns.model_free-module.html specific_fns/model_free.py] has been fixed to properly handle the local &tau;<sub>m</sub> parameter as well as the global &tau;<sub>m</sub> parameter.
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* The code of [http://www.nmr-relax.com/api/1.2/generic_fns.value-module.html generic_fns/value.py], [http://www.nmr-relax.com/api/1.2/generic_fns.diffusion_tensor-module.html generic_fns/diffusion_tensor.py], and [http://www.nmr-relax.com/api/1.2/specific_fns.model_free-module.html specific_fns/model_free.py] has been fixed to properly handle the local {{:tau_m}} parameter as well as the global {{:tau_m}} parameter.
  
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* The local &tau;<sub>m</sub> parameter can now also be part of the parameter set for an OpenDX map of the chi-squared space.
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* The local {{:tau_m}} parameter can now also be part of the parameter set for an [http://www.nmr-relax.com/manual/dx_map.html OpenDX map of the chi-squared space].
  
 
* The optimisation code has been fixed to handle the unstable, broken Numeric Python packages so that the Cholesky Hessian modification works again and the eigenvalue decomposition (which now freezes Python) is avoided.
 
* The optimisation code has been fixed to handle the unstable, broken Numeric Python packages so that the Cholesky Hessian modification works again and the eigenvalue decomposition (which now freezes Python) is avoided.
  
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* The file [http://www.nmr-relax.com/api/1.2/generic_fns.palmer-module.html generic_fns/palmer.py] has been modified to gracefully handle a Modelfree4 bug whereby the 'mfout' output file has been corrupted due to the fusion of columns.
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* The file [http://www.nmr-relax.com/api/1.2/generic_fns.palmer-module.html generic_fns/palmer.py] has been modified to gracefully handle a [[Modelfree4]] bug whereby the <code>mfout</code> output file has been corrupted due to the fusion of columns.
 
<section end=description/>
 
<section end=description/>
  
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= Links =
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== Links ==
  
 
<section begin=links/>
 
<section begin=links/>
 
For reference, the following links are also part of the announcement for this release:
 
For reference, the following links are also part of the announcement for this release:
 
* [http://wiki.nmr-relax.com/Relax_1.2.2 Official release notes]
 
* [http://wiki.nmr-relax.com/Relax_1.2.2 Official release notes]
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* [https://gna.org/forum/forum.php?forum_id=1082 Gna! news item]
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* {{gna link|url=gna.org/forum/forum.php?forum_id=1082|text=Gna! news item}}
 
* [http://article.gmane.org/gmane.science.nmr.relax.user/135 Gmane]
 
* [http://article.gmane.org/gmane.science.nmr.relax.user/135 Gmane]
 
* [http://www.mail-archive.com/relax-users@gna.org/msg00008.html Mail archive]
 
* [http://www.mail-archive.com/relax-users@gna.org/msg00008.html Mail archive]
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<section end=links/>
 
<section end=links/>
  
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= Announcements =
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== Announcements ==
 
{{:relax release announcements}}
 
{{:relax release announcements}}
  
  
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= See also =
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== See also ==
  
 
* [http://www.nmr-relax.com/api/1.2/ The relax 1.2 API documentation]
 
* [http://www.nmr-relax.com/api/1.2/ The relax 1.2 API documentation]
 
{{:relax release see also}}
 
{{:relax release see also}}

Latest revision as of 21:47, 8 October 2020


Official relax releases
relax logo
relax version 1.2.2
Previous version Next version
← relax 1.2.1 relax 1.2.3 →
Keywords Operating system compatibility
Release type Major feature
Release date 20 February 2006
The PDF version of the relax 1.2.2 user manual The relax 1.2.2 user manual

Description

This release improves compatibility for different operating systems including Unix, Mac OS X, and Windows. To achieve this, the make system has been replaced by the Sconstruct system. Both the Dasha and Modelfree4 code has been significantly improved. A number of bugs have also been fixed including:

  • The automatically generated Dasha script has been fixed. Previously the optimise command used was min all or lmin all. This is incorrect and the proper syntax is min m n or lmin m n where m is the first residue number while n is the last.
  • The optimisation code has been fixed to handle the unstable, broken Numeric Python packages so that the Cholesky Hessian modification works again and the eigenvalue decomposition (which now freezes Python) is avoided.
  • The file generic_fns/palmer.py has been modified to gracefully handle a Modelfree4 bug whereby the mfout output file has been corrupted due to the fusion of columns.


Links

For reference, the following links are also part of the announcement for this release:


Announcements

If you would like to receive announcements about new relax versions, please subscribe to the relax announcement mailing list. This list only receives ~10 emails per year. It is archived at the SourceForge archives and in The Mail Archive.


See also


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